Table 1 Evidence of cyclic behavior for top genes identified by JTK_Cycle
From: Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response
Gene | Evidence of cyclic behavior | Source |
|---|---|---|
Carbonic anhydrase 5 (CAH5) | upregulated DE gene in response to light stimulation | Adewoye et al. 2015 [59] |
cypher (cyr) | downregulated DE gene in response to light stimulation | |
CG17127 | photoperiodic | Pegoraro and Tauber 2018 [60] |
rhythmically expressed in constant dark conditions | Ueda et al. 2002 [61] | |
Alcohol dehydrogenase CG4842 and Cuticular protein 72Ec (Cpr72Ec) | downregulated in the retina after heme oxygenase (ho) silencing in photoreceptor cells | Damulewicz et al. 2019 [62] |
CG8170 | cycling mRNA | Huang et al. 2013 [63] |
Juvenile hormone esterase (Jhe) | cyclic hemolymph activity | Zhao and Zera 2004 [64] |
Sodium-dependent multivitamin transporter (Smvt) | modulated by the circadian rhythm in mice | He et al. 2016 [65] |
CG10560, Sgroppino (Sgp), CG15253, CG15254, CG18493, CG31321, CG33511, CG34134, CG42329, and sodium/solute symporter salty dog (salt) | none reported | |