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Table 1 The SDG duplicated gene pairs in apple

From: Genome-wide analysis of SET-domain group histone methyltransferases in apple reveals their role in development and stress responses

Syntenic gene pair Ka Ks Ka/Ks EffectiveLen AverageS-sites AverageN-sites Divergence Time (MYA)
MD00G1060700 MD02G1265700 0.59 1.74* 0.34 2115 472.25 1642.75 58.15
MD00G1068300 MD12G1112200 0.02 0.12 0.19 2112 504.00 1608.00 4.16
MD00G1179500 MD03G1294100 0.04 0.18 0.22 1872 419.00 1453.00 5.98
MD01G1012000 MD15G1338000 0.03 0.17 0.19 1143 263.58 879.42 5.65
MD01G1080200 MD07G1289800 0.36 1.58* 0.23 3018 657.33 2360.67 52.62
MD01G1220300 MD07G1289800 0.04 0.17 0.22 3222 713.25 2508.75 5.51
MD02G1157000 MD15G1271600 0.04 0.15 0.28 4506 1002.00 3504.00 5.01
MD02G1174900 MD15G1285900 0.02 0.33 0.07 474 112.42 361.58 10.99
MD02G1267300 MD07G1051900 0.04 0.13 0.31 2061 476.42 1584.58 4.20
MD03G1258900 MD11G1279700 0.17 0.25 0.66 888 199.08 688.92 8.47
MD04G1028500 MD13G1279000 0.02 0.13 0.17 1557 365.50 1191.50 4.34
MD04G1231900 MD12G1250000 0.10 0.34 0.31 744 165.83 578.17 11.23
MD05G1031300 MD10G1032900 0.03 0.18 0.17 777 169.33 607.67 5.98
MD05G1244800 MD10G1226200 0.12 0.41 0.30 567 121.33 445.67 13.79
MD08G1159600 MD15G1133700 0.06 0.12 0.51 6240 1406.92 4833.08 4.07
MD09G1002600 MD17G1006800 0.02 0.14 0.17 2028 471.08 1556.92 4.74
MD09G1103200 MD17G1091000 0.03 0.14 0.26 7383 1669.42 5713.58 4.51
MD09G1129500 MD17G1118300 0.25 0.52 0.48 1212 288.67 923.33 17.35
MD12G1009500 MD04G1052400 0.79 NaN NaN 1014 240.58 773.42
MD12G1043600 MD02G1265700 0.09 0.16 0.58 426 99.83 326.17 5.38
MD13G1020900 MD16G1019300 0.03 0.15 0.21 1431 338.25 1092.75 5.00
MD13G1130100 MD16G1130300 0.04 0.17 0.24 2010 462.42 1547.58 5.77
MD13G1134900 MD16G1130700 0.06 0.28 0.22 1194 278.08 915.92 9.42
MD13G1224000 MD16G1228800 0.02 0.22 0.09 1890 448.67 1441.33 7.43
MD14G1101300 MD00G1068300 0.01 0.01 0.94 1521 362.25 1158.75 0.28
MD15G1141800 MD16G1258900 0.50 NaN NaN 819 177.83 641.17
MD01G1224300 MD01G1012000 0.31 3.21 0.10 1044 234.92 809.08 107.01
MD07G1058000 MD07G1058100 0.39 0.86 0.46 1443 324.58 1118.42 28.58
MD13G1069000 MD13G1134900 1.06 2.89 0.37 1164 269.75 894.25 96.21
  1. The bold SDG gene pairs represented tandem duplicated genes and the others were segmentally duplicated genes. The divergence time of SDG gene pairs was calculated by T = Ks/2r (r = 1.5 × 10 − 8) [36]