Skip to main content

Table 1 The SDG duplicated gene pairs in apple

From: Genome-wide analysis of SET-domain group histone methyltransferases in apple reveals their role in development and stress responses

Syntenic gene pair

Ka

Ks

Ka/Ks

EffectiveLen

AverageS-sites

AverageN-sites

Divergence Time (MYA)

MD00G1060700

MD02G1265700

0.59

1.74*

0.34

2115

472.25

1642.75

58.15

MD00G1068300

MD12G1112200

0.02

0.12

0.19

2112

504.00

1608.00

4.16

MD00G1179500

MD03G1294100

0.04

0.18

0.22

1872

419.00

1453.00

5.98

MD01G1012000

MD15G1338000

0.03

0.17

0.19

1143

263.58

879.42

5.65

MD01G1080200

MD07G1289800

0.36

1.58*

0.23

3018

657.33

2360.67

52.62

MD01G1220300

MD07G1289800

0.04

0.17

0.22

3222

713.25

2508.75

5.51

MD02G1157000

MD15G1271600

0.04

0.15

0.28

4506

1002.00

3504.00

5.01

MD02G1174900

MD15G1285900

0.02

0.33

0.07

474

112.42

361.58

10.99

MD02G1267300

MD07G1051900

0.04

0.13

0.31

2061

476.42

1584.58

4.20

MD03G1258900

MD11G1279700

0.17

0.25

0.66

888

199.08

688.92

8.47

MD04G1028500

MD13G1279000

0.02

0.13

0.17

1557

365.50

1191.50

4.34

MD04G1231900

MD12G1250000

0.10

0.34

0.31

744

165.83

578.17

11.23

MD05G1031300

MD10G1032900

0.03

0.18

0.17

777

169.33

607.67

5.98

MD05G1244800

MD10G1226200

0.12

0.41

0.30

567

121.33

445.67

13.79

MD08G1159600

MD15G1133700

0.06

0.12

0.51

6240

1406.92

4833.08

4.07

MD09G1002600

MD17G1006800

0.02

0.14

0.17

2028

471.08

1556.92

4.74

MD09G1103200

MD17G1091000

0.03

0.14

0.26

7383

1669.42

5713.58

4.51

MD09G1129500

MD17G1118300

0.25

0.52

0.48

1212

288.67

923.33

17.35

MD12G1009500

MD04G1052400

0.79

NaN

NaN

1014

240.58

773.42

–

MD12G1043600

MD02G1265700

0.09

0.16

0.58

426

99.83

326.17

5.38

MD13G1020900

MD16G1019300

0.03

0.15

0.21

1431

338.25

1092.75

5.00

MD13G1130100

MD16G1130300

0.04

0.17

0.24

2010

462.42

1547.58

5.77

MD13G1134900

MD16G1130700

0.06

0.28

0.22

1194

278.08

915.92

9.42

MD13G1224000

MD16G1228800

0.02

0.22

0.09

1890

448.67

1441.33

7.43

MD14G1101300

MD00G1068300

0.01

0.01

0.94

1521

362.25

1158.75

0.28

MD15G1141800

MD16G1258900

0.50

NaN

NaN

819

177.83

641.17

–

MD01G1224300

MD01G1012000

0.31

3.21

0.10

1044

234.92

809.08

107.01

MD07G1058000

MD07G1058100

0.39

0.86

0.46

1443

324.58

1118.42

28.58

MD13G1069000

MD13G1134900

1.06

2.89

0.37

1164

269.75

894.25

96.21

  1. The bold SDG gene pairs represented tandem duplicated genes and the others were segmentally duplicated genes. The divergence time of SDG gene pairs was calculated by T = Ks/2r (r = 1.5 × 10 − 8) [36]
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us