Table 1 Summary of the clean reads obtained from 9 strand-specific cDNA libraries
Sample | Clean reads | Clean bases | GC Content | Q30 | Mapped Reads | Unique Mapped Reads | Multiple Map Reads |
|---|---|---|---|---|---|---|---|
SD1–1 | 120,575,592 | 18,024,639,138 | 42.06% | 93.79% | 105,438,405 (87.45%) | 77,322,246 (64.13%) | 28,116,159 (23.32%) |
SD1–2 | 118,844,120 | 17,742,199,126 | 42.33% | 94.07% | 103,599,037 (87.17%) | 75,650,640 (63.66%) | 27,948,397 (23.52%) |
SD1–3 | 109,416,192 | 16,342,140,838 | 42.23% | 93.34% | 94,815,186 (86.66%) | 69,895,804 (63.88%) | 24,919,382 (22.77%) |
SD2–1 | 118,152,040 | 17,646,198,882 | 42.35% | 93.17% | 104,853,815 (88.74%) | 72,776,293 (61.60%) | 32,077,522 (27.15%) |
SD2–2 | 156,229,454 | 23,239,577,248 | 42.31% | 93.38% | 138,496,418 (88.65%) | 96,469,015 (61.75%) | 42,027,403 (26.90%) |
SD2–3 | 107,354,748 | 16,024,541,498 | 42.52% | 90.79% | 91,987,548 (85.69%) | 64,905,652 (60.46%) | 27,081,896 (25.23%) |
NB-1 | 107,521,308 | 16,067,918,002 | 42.84% | 91.25% | 91,911,056 (85.48%) | 67,788,130 (63.05%) | 24,122,926 (22.44%) |
NB-2 | 119,435,422 | 17,792,985,836 | 42.53% | 93.07% | 104,464,425 (87.47%) | 76,143,854 (63.75%) | 28,320,571 (23.71%) |
NB-3 | 117,442,040 | 17,505,052,862 | 42.31% | 94.01% | 103,617,559 (88.23%) | 75,619,123 (64.39%) | 27,998,436 (23.84%) |