Table 1 Summary statistics of RNA-seq reads generated through the HiSeq 2500 ultra-high-throughput sequencing system
Genotype | Time point | Raw reads combined together | Adapter trimmed & Quality clipped reads | Mapping to reference genomes (%) | |||
|---|---|---|---|---|---|---|---|
Total reads | Bases | Total reads | Bases | BTx623 | RTx430 | ||
RTx2911 | 0 h | 35,193,900 | 5,314,278,900 | 35,029,678 | 5,133,585,627 | 82.50 | 83.68 |
RTx2911 | 0 h | 34,912,900 | 5,271,847,900 | 34,631,646 | 4,913,623,155 | 82.73 | 82.34 |
RTx2911 | 0 h | 33,077,984 | 4,994,775,584 | 32,974,808 | 4,785,724,826 | 71.82 | 74.36 |
RTx2911 | 24 h | 38,532,904 | 5,818,468,504 | 38,395,698 | 5,647,473,903 | 77.70 | 80.06 |
RTx2911 | 24 h | 52,634,848 | 7,947,862,048 | 52,565,274 | 7,712,587,392 | 78.28 | 79.00 |
RTx2911 | 24 h | 46,206,820 | 6,977,229,820 | 46,082,874 | 6,688,093,720 | 74.55 | 75.34 |
RTx430 | 0 h | 40,628,242 | 6,134,864,542 | 40,426,498 | 5,894,899,883 | 76.98 | 80.88 |
RTx430 | 0 h | 33,352,520 | 5,036,230,520 | 33,298,302 | 4,868,287,180 | 75.33 | 79.36 |
RTx430 | 0 h | 23,129,326 | 3,492,528,226 | 23,079,728 | 3,369,245,420 | 77.87 | 81.21 |
RTx430 | 24 h | 28,798,260 | 4,348,537,260 | 28,741,444 | 4,245,933,800 | 77.35 | 80.66 |
RTx430 | 24 h | 33,903,182 | 5,119,380,482 | 33,844,156 | 4,979,185,158 | 77.93 | 81.57 |
RTx430 | 24 h | 33,025,920 | 4,986,913,920 | 32,955,150 | 4,855,366,073 | 78.40 | 82.01 |