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Table 2 Genes encoding known cold & stress response and DNA repair proteins as predicted in the genome of G. arilaitensis LJH19

From: Comparative genomics and physiological investigation supported safety, cold adaptation, efficient hydrolytic and plant growth-promoting potential of psychrotrophic Glutamicibacter arilaitensis LJH19, isolated from night-soil compost

Category and GenBank ID

Description

Category and GenBank ID

Description

Cold active chaperones

Osmotic Stress/ Oxidative stress

TFH54768, TFH56297, TFH57075

Cold-shock protein

TFH56153

Glycine betaine ABC transporter substrate-binding protein

TFH56633

Co-chaperone GroES

TFH56253

Sarcosine oxidase subunit beta family protein

TFH56634, TFH54762

Chaperonin GroEL

TFH56254

Sarcosine oxidase subunit delta family protein

TFH57159

Molecular chaperone DnaJ

TFH56255

Sarcosine oxidase subunit alpha family protein

TFH54768, TFH56297, TFH57075

Cold-shock protein

TFH56256

Sarcosine oxidase subunit gamma family protein

TFH56633

Co-chaperone GroES

TFH56949

Superoxide dismutase

TFH56416

Molecular chaperone DnaK

TFH57402, TFH54880

Catalase

TFH56424

ATP-dependent chaperone ClpB

TFH56696, TFH56988, TFH56162

OsmC family peroxiredoxin

TFH57532

Heat shock protein HslJ / META domain-containing protein

TFH55537

Organic hydroperoxide resistance protein

TFH56416

Molecular chaperone DnaK

TFH55668, TFH56321, TFH56523, TFH54754, TFH55543

Thioredoxin

TFH56424

ATP-dependent chaperone ClpB

TFH55669

Thioredoxin-disulfide reductase

Carbon storage/starvation

TFH55955, TFH57498

Thioredoxin-dependent thiol peroxidase

TFH54400

Carbon starvation protein A

TFH56887

Thioredoxin family protein

TFH56944, TFH57627, TFH57801

1-acyl-sn-glycerol-3-phosphate acyltransferase

TFH54908

Thioredoxin domain-containing protein

Membrane/cell wall alteration

TFH56279

Sodium/proline symporter PutP

TFH55154

3-oxoacyl-ACP synthase III

TFH54956

Na+/H+ antiporter NhaA

TFH57491

Phytoene desaturase

TFH54753

Trehalose-6-phosphate synthase

TFH57492

Phytoene/squalene synthase

TFH54752

Trehalose-phosphatase

General Stress response

DNA repair

TFH55892, TFH56176, TFH56200, TFH56262, TFH57611, TFH55142, TFH54651, TFH55629

Universal stress protein

TFH54856, TFH54452

Recombinase family protein

TFH57700, TFH57339

GlsB/YeaQ/YmgE family stress response membrane protein

TFH55191

Recombinase RecA

TFH54980, TFH56483

Serine/threonine protein kinase

TFH57358

Tyrosine recombinase XerC

TFH57322

Peroxide stress protein YaaA

TFH57661

Site-specific tyrosine recombinase XerD

TFH54953

50S ribosomal protein L25

TFH57734

Recombinase

TFH57081

SOS response-associated peptidase

TFH54405

ATP-dependent DNA helicase RecQ

Toxin/Antitoxin modules

TFH55567

DNA repair protein RadA

TFH54837

Type II toxin-antitoxin system prevent-host-death family antitoxin

TFH57167

DNA repair protein RecO

TFH54532

Type II toxin-antitoxin system VapB family antitoxin

TFH55568

DNA integrity scanning protein DisA

TFH54610

Type II toxin-antitoxin system HipA family toxin

TFH57664

DNA repair protein RecN

TFH56658

Type II toxin-antitoxin system Phd/YefM family antitoxin

TFH57433

ATP-dependent DNA helicase RecG

TFH57154

Type II toxin-antitoxin system PemK/MazF family toxin

TFH56747

ATP-dependent DNA helicase UvrD2

TFH57340

Toxin component of a toxin/antitoxin system

TFH57103

Holliday junction branch migration protein RuvA

TFH55640

Serine/threonine-protein kinase

TFH57104

Holliday junction branch migration DNA helicase RuvB

  

TFH57121

Holliday junction resolvase RuvX