Skip to main content

Table 2 Unigenes upregulated with stage specific expression patterns in Tripidium inflorescence development

From: Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

Gene name

Unitig ID

E-valuex

% Idx

Fold Changey

FDR p-valuey

TPM Normalized Means

VM

20P

40P

80P

120P

160P

200P

Inflorescence meristems at 20 cm (20P)

 Mini zinc finger protein 1

Trav0045635

6.1E−28

85.5

67.9

2.8E−3

1.7

106.9

16.1

59.7

1.6

3.1

2.9

 Dehydrodolichyl diphosphate synthase 2

Trav0048752

3.3E−93

89.3

48.8

7.7E−3

0.7

35.0

1.2

20.1

0.7

1.5

1.7

 n/a

Trav0022235

n/a

n/a

48.7

3.1E−3

9.6

400.4

13.4

123.6

9.6

11.8

13.6

 Transcription factor TGA4

Trav0031073

3.1E−123

87.8

23.1

8.6E−4

7.5

153.9

14.9

51.8

4.9

5.6

6.5

 n/a

Trav0012164

n/a

n/a

17.2

4.3E−3

28.2

424.0

21.5

120.0

8.9

16.4

17.6

Inflorescence meristems at 40 cm (40P)

 n/a

Trav0005961

n/a

n/a

402.5

2.1E−6

0

8.5

52.7

29.3

28.7

26.4

19.8

 n/a

Trav0020850

n/a

n/a

203.4

2.1E−5

0

10.4

26.3

25.2

24.7

14.4

8.7

Inflorescence meristems at 80 cm (80P)

 MADS-box trans. factor 34

Trav0005828

4.2E−103

86.8

210.4

5.5E−5

0.2

2.7

2.2

68.2

144.2

168.5

180.8

Inflorescence meristems at 120 cm (120P)

 n/a

Trav0000921

n/a

n/a

204.8

5.0E−2

2.1

7.5

0.7

4.7

367.0

752.9

1063.1

 Sucrose-phosphate synthase

Trav0002204

0

93.7

109.1

1.9E−6

0.8

7.0

4.4

12.1

35.4

91.2

146.0

 MADS-box trans. factor 7

Trav0000111

3.6E−171

92.0

202.0

1.4E−3

0.5

1.1

0.3

10.0

101.9

171.3

233.0

Inflorescence meristems at 160 cm (160P)

 n/a

Trav0012650

n/a

n/a

104.4

5.0E−6

0.7

5.2

3.2

7.6

25.4

69.5

60.4

 Carbonic anhydrase

Trav0005356

5.3E−58

96.6

152.0

4.0E−2

4.7

24.0

0.4

3.1

337.7

573.4

571.9

Inflorescence meristems at 200 cm (200P)

 Arginine decarboxylase 2

Trav0036107

0

81.2

1472.0

8.2E−3

0.1

0.9

0.1

0.3

41.1

213.8

294.0

 n/a

Trav0006980

n/a

n/a

487.1

1.1E− 3

2.2

3.0

1.8

2.7

183.0

677.9

959.9

 MADS-box trans. factor 8

Trav0000081

4.5E−175

96.2

471.5

2.7E−6

0.6

1.5

0.5

10.2

107.0

218.1

300.9

 Protein unc-13 homolog

Trav0005596

0

90.2

104.5

5.0E−3

1.9

3.8

1.4

2.6

61.0

137.7

174.1

 MADS-box trans. factor 16

Trav0000760

5.5E−27

83.7

87.3

2.8E−4

1.0

0.4

0.5

2.9

40.7

70.5

85.2

 MADS-box trans. factor 4

Trav0000787

4.6E−76

98.3

40.2

7.0E−6

3.7

6.3

3.8

9.9

41.7

89.3

139.4

 Sister chromatid cohesion 1 protein 1

Trav0023214

0

88.8

34.2

4.5E− 4

0.5

1.2

0.5

2.6

6.6

15.1

17.8

  1. xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
  2. yFold change and FDR p-values are derived from EDGE tests between the vegetative control and inflorescence development stage of each underlined subsection within the table
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us