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Table 2 Unigenes upregulated with stage specific expression patterns in Tripidium inflorescence development

From: Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

Gene name Unitig ID E-valuex % Idx Fold Changey FDR p-valuey TPM Normalized Means
VM 20P 40P 80P 120P 160P 200P
Inflorescence meristems at 20 cm (20P)
 Mini zinc finger protein 1 Trav0045635 6.1E−28 85.5 67.9 2.8E−3 1.7 106.9 16.1 59.7 1.6 3.1 2.9
 Dehydrodolichyl diphosphate synthase 2 Trav0048752 3.3E−93 89.3 48.8 7.7E−3 0.7 35.0 1.2 20.1 0.7 1.5 1.7
 n/a Trav0022235 n/a n/a 48.7 3.1E−3 9.6 400.4 13.4 123.6 9.6 11.8 13.6
 Transcription factor TGA4 Trav0031073 3.1E−123 87.8 23.1 8.6E−4 7.5 153.9 14.9 51.8 4.9 5.6 6.5
 n/a Trav0012164 n/a n/a 17.2 4.3E−3 28.2 424.0 21.5 120.0 8.9 16.4 17.6
Inflorescence meristems at 40 cm (40P)
 n/a Trav0005961 n/a n/a 402.5 2.1E−6 0 8.5 52.7 29.3 28.7 26.4 19.8
 n/a Trav0020850 n/a n/a 203.4 2.1E−5 0 10.4 26.3 25.2 24.7 14.4 8.7
Inflorescence meristems at 80 cm (80P)
 MADS-box trans. factor 34 Trav0005828 4.2E−103 86.8 210.4 5.5E−5 0.2 2.7 2.2 68.2 144.2 168.5 180.8
Inflorescence meristems at 120 cm (120P)
 n/a Trav0000921 n/a n/a 204.8 5.0E−2 2.1 7.5 0.7 4.7 367.0 752.9 1063.1
 Sucrose-phosphate synthase Trav0002204 0 93.7 109.1 1.9E−6 0.8 7.0 4.4 12.1 35.4 91.2 146.0
 MADS-box trans. factor 7 Trav0000111 3.6E−171 92.0 202.0 1.4E−3 0.5 1.1 0.3 10.0 101.9 171.3 233.0
Inflorescence meristems at 160 cm (160P)
 n/a Trav0012650 n/a n/a 104.4 5.0E−6 0.7 5.2 3.2 7.6 25.4 69.5 60.4
 Carbonic anhydrase Trav0005356 5.3E−58 96.6 152.0 4.0E−2 4.7 24.0 0.4 3.1 337.7 573.4 571.9
Inflorescence meristems at 200 cm (200P)
 Arginine decarboxylase 2 Trav0036107 0 81.2 1472.0 8.2E−3 0.1 0.9 0.1 0.3 41.1 213.8 294.0
 n/a Trav0006980 n/a n/a 487.1 1.1E− 3 2.2 3.0 1.8 2.7 183.0 677.9 959.9
 MADS-box trans. factor 8 Trav0000081 4.5E−175 96.2 471.5 2.7E−6 0.6 1.5 0.5 10.2 107.0 218.1 300.9
 Protein unc-13 homolog Trav0005596 0 90.2 104.5 5.0E−3 1.9 3.8 1.4 2.6 61.0 137.7 174.1
 MADS-box trans. factor 16 Trav0000760 5.5E−27 83.7 87.3 2.8E−4 1.0 0.4 0.5 2.9 40.7 70.5 85.2
 MADS-box trans. factor 4 Trav0000787 4.6E−76 98.3 40.2 7.0E−6 3.7 6.3 3.8 9.9 41.7 89.3 139.4
 Sister chromatid cohesion 1 protein 1 Trav0023214 0 88.8 34.2 4.5E− 4 0.5 1.2 0.5 2.6 6.6 15.1 17.8
  1. xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
  2. yFold change and FDR p-values are derived from EDGE tests between the vegetative control and inflorescence development stage of each underlined subsection within the table