Table 3 Unigenes upregulated with stage specific expression patterns in Tripidium flower development
From: Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)
Gene name | Unitig ID | E-valuex | % Idx | Fold Changey | FDR p-valuey | TPM Normalized Means | ||||
|---|---|---|---|---|---|---|---|---|---|---|
120P | FT | PAF | ST | ANT | ||||||
Stamens (ST) | ||||||||||
 Glucan endo-1,3-beta-glucosidase 8 | Trav0002923 | 0 | 92.1 | 4394.1 | 1.9E−7 | 0.1 | 208.4 | 322.4 | 749.7 | 156.3 |
 Homeobox protein ARX-like | Trav0000011 | 1.4E−112 | 79.7 | 1855.9 | 6.4E−12 | 2.1 | 903.4 | 1226.8 | 2510.5 | 678.1 |
 Pollen receptor-like kinase 3 | Trav0004991 | 0 | 82.4 | 1850.4 | 6.4E−10 | 0.2 | 94.7 | 167.5 | 331.5 | 86.5 |
 Male gametophyte-specific2 | Trav0008881 | 0 | 89.0 | 1451.8 | 1.1E−10 | 0.1 | 36.8 | 121.0 | 242.5 | 55.7 |
 Pollen receptor-like kinase 4 | Trav0008246 | 0 | 84.8 | 1286.6 | 2.8E−8 | 0.3 | 174.5 | 246.1 | 323.0 | 122.8 |
 Ethylene-responsive trans. factor ABR1 | Trav0065092 | 5.5E−33 | 74.1 | 1204.8 | 3.2E−27 | 0.1 | 4.8 | 5.1 | 208.8 | 16.4 |
 GAMETE EXPRESSED 1 | Trav0007983 | 0 | 87.8 | 898.2 | 8.4E−12 | 0.3 | 51.6 | 53.6 | 232.4 | 45.4 |
 REVEILLE 1 | Trav0051764 | 0 | 82.0 | 719.6 | 3.2E−34 | 3.4 | 19.3 | 23.5 | 1736.8 | 73.9 |
 Xylanase inhibitor protein 1 | Trav0043283 | 0 | 91.2 | 565.4 | 3.0E−13 | 2.9 | 66.0 | 68.7 | 1142.4 | 343.9 |
Florets at anthesis (ANT) | ||||||||||
 n/a | Trav0031057 | n/a | n/a | 2120.1 | 2.2E-9 | 0.8 | 372.7 | 260.8 | 1269.9 | 1753.1 |
 5-pentadecatri-enyl resorcinol O-methyltransferase | Trav0039042 | 1.9E−161 | 78.1 | 1345.4 | 9.4E−10 | 0.3 | 34.5 | 12.6 | 118.1 | 531.8 |
 Myosin-binding protein 1 | Trav0000816 | 0 | 78.8 | 114.9 | 7.6E−6 | 1.1 | 227.8 | 279.5 | 1010.0 | 126.2 |
Pre-anthesis florets (PAF) | ||||||||||
 Expansin-B11 | Trav0005943 | 2.3E−39 | 93.3 | 1765.5 | 7.8E−12 | 0.2 | 80.9 | 371.5 | 206.4 | 0.2 |
 Predicted protein | Trav0003235 | 0 | 78.9 | 1600.0 | 1.4E−6 | 0.1 | 27.8 | 263.7 | 6.3 | 16.2 |
 Pollen allergen Phl p 2 | Trav0005342 | 7.9E−48 | 80.9 | 810.2 | 9.7E−10 | 0 | 31.4 | 127.6 | 71.2 | 45.8 |
 Zinc finger protein ZAT5 | Trav0002821 | 2.6E−88 | 55.8 | 485.6 | 3.9E−6 | 0.1 | 36.4 | 91.3 | 28.3 | 0.1 |
Boot stage florets (FT) | ||||||||||
 AG-like MADS-box protein AGL66 X4 | Trav0007544 | 0 | 82.8 | 26.9 | 5.6E−3 | 0.4 | 11.8 | 22.7 | 32.7 | 9.8 |
 Retrotransposon protein, putative, unclassified | Trav0016899 | 0 | 63.8 | 24.5 | 0.04 | 0.3 | 9.8 | 11.8 | 7.5 | 17.1 |
 auxin-responsive protein SAUR71 | Trav0074745 | 6.8E−40 | 81.7 | 18.8 | 0.02 | 0.2 | 6.3 | 1.8 | 1.2 | 21.4 |
 Zn finger protein CONSTANS-LIKE 5 | Trav0016572 | 8.3E−19 | 83.0 | 11.0 | 4.3E−3 | 9.6 | 94.5 | 67.2 | 12.8 | 172.3 |