Skip to main content

Table 3 Unigenes upregulated with stage specific expression patterns in Tripidium flower development

From: Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

Gene name Unitig ID E-valuex % Idx Fold Changey FDR p-valuey TPM Normalized Means
120P FT PAF ST ANT
Stamens (ST)
 Glucan endo-1,3-beta-glucosidase 8 Trav0002923 0 92.1 4394.1 1.9E−7 0.1 208.4 322.4 749.7 156.3
 Homeobox protein ARX-like Trav0000011 1.4E−112 79.7 1855.9 6.4E−12 2.1 903.4 1226.8 2510.5 678.1
 Pollen receptor-like kinase 3 Trav0004991 0 82.4 1850.4 6.4E−10 0.2 94.7 167.5 331.5 86.5
 Male gametophyte-specific2 Trav0008881 0 89.0 1451.8 1.1E−10 0.1 36.8 121.0 242.5 55.7
 Pollen receptor-like kinase 4 Trav0008246 0 84.8 1286.6 2.8E−8 0.3 174.5 246.1 323.0 122.8
 Ethylene-responsive trans. factor ABR1 Trav0065092 5.5E−33 74.1 1204.8 3.2E−27 0.1 4.8 5.1 208.8 16.4
GAMETE EXPRESSED 1 Trav0007983 0 87.8 898.2 8.4E−12 0.3 51.6 53.6 232.4 45.4
REVEILLE 1 Trav0051764 0 82.0 719.6 3.2E−34 3.4 19.3 23.5 1736.8 73.9
 Xylanase inhibitor protein 1 Trav0043283 0 91.2 565.4 3.0E−13 2.9 66.0 68.7 1142.4 343.9
Florets at anthesis (ANT)
 n/a Trav0031057 n/a n/a 2120.1 2.2E-9 0.8 372.7 260.8 1269.9 1753.1
 5-pentadecatri-enyl resorcinol O-methyltransferase Trav0039042 1.9E−161 78.1 1345.4 9.4E−10 0.3 34.5 12.6 118.1 531.8
 Myosin-binding protein 1 Trav0000816 0 78.8 114.9 7.6E−6 1.1 227.8 279.5 1010.0 126.2
Pre-anthesis florets (PAF)
 Expansin-B11 Trav0005943 2.3E−39 93.3 1765.5 7.8E−12 0.2 80.9 371.5 206.4 0.2
 Predicted protein Trav0003235 0 78.9 1600.0 1.4E−6 0.1 27.8 263.7 6.3 16.2
 Pollen allergen Phl p 2 Trav0005342 7.9E−48 80.9 810.2 9.7E−10 0 31.4 127.6 71.2 45.8
 Zinc finger protein ZAT5 Trav0002821 2.6E−88 55.8 485.6 3.9E−6 0.1 36.4 91.3 28.3 0.1
Boot stage florets (FT)
 AG-like MADS-box protein AGL66 X4 Trav0007544 0 82.8 26.9 5.6E−3 0.4 11.8 22.7 32.7 9.8
 Retrotransposon protein, putative, unclassified Trav0016899 0 63.8 24.5 0.04 0.3 9.8 11.8 7.5 17.1
 auxin-responsive protein SAUR71 Trav0074745 6.8E−40 81.7 18.8 0.02 0.2 6.3 1.8 1.2 21.4
 Zn finger protein CONSTANS-LIKE 5 Trav0016572 8.3E−19 83.0 11.0 4.3E−3 9.6 94.5 67.2 12.8 172.3
  1. xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
  2. yFold change and FDR p-values for each gene are derived from EDGE tests between inflorescence meristem samples at 120 cm of development and each underlined subsection within the table