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Table 4 Unigenes upregulated with stage specific expression patterns in Tripidium seed development

From: Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

Gene name Unitig ID E-valuex % Idx Fold Changey FDR p-valuey TPM Normalized Means
200P ANT IS MS
Mature seeds (MS)
 Globulin-1 S allele Trav0051718 0 83.5 32,919.7 7.1E−7 0.4 1.4 7883.0 16,578.5
 Embryonic abundant protein 1 Trav0073008 4.2E−41 95.7 23,575.7 5.8E−6 0.26 0.19 4424.2 9490.7
 Aquaporin TIP3–1 Trav0101881 1.8E−130 94.0 14,828.8 8.4E−6 0.1 0.28 2266.5 3572.9
 Vicilin-like seed storage protein At2g28490 Trav0121709 3.8E−87 87.7 9135.7 1.6E−5 0 0 628.7 1237.7
 n/a Trav0084667 n/a n/a 281.5 6.7E−16 0 0 0.2 40.1
 n/a Trav0133404 n/a n/a 276.5 1.4E−9 0 0 0 40.3
Immature seeds (IS)
 Em-like protein GEA1 Trav0097540 3.7E−49 87.0 21,364.3 1.5E−4 0 0 2616.3 4543.1
 Oleosin 16 kDa Trav0094715 1.9E−45 77.2 7209.0 2.2E−5 0.1 0.2 1195.2 907.0
 n/a Trav0099087 n/a n/a 5148.0 9.4E−5 0 0 584.4 707.9
 Seed biotin-containing protein SBP65 Trav0121829 1.7E−50 76.5 3075.0 9.0E−5 0 0 348.7 334.6
 Metal-assoc. isoprenylated plant protein 7 Trav0143502 1.5E−55 77.0 2029.7 6.4E−4 0 0 230.2 244.4
 n/a Trav0137461 n/a n/a 1776.7 1.7E−4 0 0 201.9 212.6
 Globulin-2 Trav0102378 7.8E−59 91.5 953.5 8.3E−5 0 0 109.6 96.3
 Cytochrome P450 99A2 Trav0083879 0 78.5 842.3 3.7E−4 0 78.4 93.3 0.3
Florets at anthesis (ANT)
 Berberine bridge enzyme-like 18 Trav0097613 0 91.1 807.0 6.7E−6 0 100.3 36.4 0.3
 Xyloglucan endotransglucosylase/hydrolase 2 Trav0071493 1.4E−74 77.7 790.4 7.8E−3 0 87.2 7.4 0.6
 n/a Trav0083685 n/a n/a 470.4 2.0E−3 0 47.1 2.8 0.7
 n/a Trav0100871 n/a n/a 418.9 4.9E−5 0 45.4 1.9 0
 Uncharacterized protein LOC8058288 Trav0046122 0 72.6 363.8 2.5E−3 0.1 74.6 7.0 0.2
 n/a Trav0081406 n/a n/a 257.9 1.3E−4 0 26.3 1.1 0
 Ent-cassadiene C2-hydroxylase Trav0106832 3.1E−24 80.5 186.9 0.01 0 21.2 24.0 0
  1. xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
  2. yFold change and FDR p-values for each gene are derived from EDGE tests between inflorescence meristem samples at 200 cm of development and each underlined subsection within the table