Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

Table 1 Clustered miRNAs composed by downregulated (↓) and upregulated (↑) B-DE-miRNAs in brain (BR), gonad (G), muscle (MU), female (F), male (M). FG, FoldChange

Contig	Pre-miRNA ID	DNA strand	Pre-miRNA start-end	Seed similarity	Mature B-DE-miRNA	Expression in B⁺ samples	FC in B⁺ sampes
NODE_173406	mir-99a	–	9625–9682	nbr-mir-99a	mir-99a-5p	↓ GO_F	−1.23
NODE_173406	novel_13044	+	9626–9684	gmo-mir-100b-5p	novel_13044-3p	↑ BR_M	+ 1.38
NODE_615561	novel_37864	–	499–563	abu-mir-27c	novel_37864-5p	↑ BR_F	+ 2.78
	novel_37864	–	499–563	abu-mir-27c	novel_37864-3p	↑ BR_F	+ 2.49
	novel_37866	–	714–773	abu-mir-23c	novel_37864-5p	↑ BR_F	+ 2.68
	novel_37866	–	714–773	abu-mir-23c	novel_37864-3p	↑ BR_F	+ 2.51
NODE_65503	novel_5423	–	4439–4498	ccr-mir-217	novel_5423-5p	↓ GO_F	−2.16
	novel_5423	–	4439–4498	ccr-mir-217	novel_5423-3p	↓ GO_F	−1.76
	novel_5425	–	5012–5075	ccr-mir-216a	novel_5425-5p	↓ GO_F	−1.11
	novel_5427	–	5708–5768	ccr-mir-216b	novel_5427-3p	↓ GO_F	−2.19
					novel_5427-5p	↓ GO_F	−1.70
					novel_5427-5p	↑ MU_F	+ 2.50
NODE_843581	mir-194	–	58381–58436	ccr-mir-194	mir-194-3p	↓ MU_M	−2.33
NODE_843581	mir-192	–	58185–58246	ccr-mir-192	mir-192-3p	↓ MU_M	−2.67
NODE_91705	mir-212-2	–	2623–2690	dre-mir-212-2	mir-212-2-5p	↓ GO_F	−1.89
NODE_91705	novel_7483	–	4415–4473	gmo-mir-2184	novel_7483-5p	↑ BR_F	+ 1.27

ISSN: 1471-2164