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Table 5 Significant CNVRs associated with BFT in U.S. and Canadian Duroc pigs

From: Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs

Population

CNVR ID1

Type2

Chromosome

Start (bp)

End (bp)

P-value3

Candidate genes

U.S. Duroc

CNVR 69

Mixed

1

265,085,761

265,301,383

1.09E-07

 

CNVR 136

Loss

2

135,551,879

135,647,128

1.73E-03

 

CNVR 149

Mixed

3

162,027

2,071,648

1.57E-05

GPER1, PDGFA, GNA12

CNVR 152

Mixed

3

2,789,839

3,480,462

2.94E-03

SDK1

CNVR 315

Gain

5

52,276,104

52,737,350

4.03E-04

 

CNVR 333

Mixed

6

51,842

1,462,744

6.16E-03

 

CNVR 415

Mixed

7

29,599,648

30,265,671

4.66E-03

 

CNVR 514

Loss

9

619,847

1,268,010

1.52E-03

 

CNVR 584

Mixed

10

67,366,433

68,403,256

3.74E-06

 

CNVR 621

Mixed

11

77,144,460

78,780,052

3.24E-07

GRTP1

CNVR 718

Gain

13

188,222,477

188,693,046

7.95E-06

 

CNVR 732

Mixed

13

206,578,011

208,240,759

3.81E-03

PFKL

CNVR 807

Mixed

14

139,484,309

141,719,266

1.64E-08

ADAM8

CNVR 862

Mixed

15

137,417,592

140,139,156

1.07E-03

 

Canadian Duroc

CNVR 488

Gain

8

97,990,916

99,088,450

7.24E-03

 
  1. 1CNVRs ID in boldface represents the CNVR had pleiotropic effects on growth and fatness traits. 2Gain: duplications; Loss: deletions; Mixed: Gain and Loss occurring in the same region. 3P-value in boldface: genome-wide significant; P-value not in boldface: suggestive significant