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Table 5 Significant CNVRs associated with BFT in U.S. and Canadian Duroc pigs

From: Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs

Population CNVR ID1 Type2 Chromosome Start (bp) End (bp) P-value3 Candidate genes
U.S. Duroc CNVR 69 Mixed 1 265,085,761 265,301,383 1.09E-07  
CNVR 136 Loss 2 135,551,879 135,647,128 1.73E-03  
CNVR 149 Mixed 3 162,027 2,071,648 1.57E-05 GPER1, PDGFA, GNA12
CNVR 152 Mixed 3 2,789,839 3,480,462 2.94E-03 SDK1
CNVR 315 Gain 5 52,276,104 52,737,350 4.03E-04  
CNVR 333 Mixed 6 51,842 1,462,744 6.16E-03  
CNVR 415 Mixed 7 29,599,648 30,265,671 4.66E-03  
CNVR 514 Loss 9 619,847 1,268,010 1.52E-03  
CNVR 584 Mixed 10 67,366,433 68,403,256 3.74E-06  
CNVR 621 Mixed 11 77,144,460 78,780,052 3.24E-07 GRTP1
CNVR 718 Gain 13 188,222,477 188,693,046 7.95E-06  
CNVR 732 Mixed 13 206,578,011 208,240,759 3.81E-03 PFKL
CNVR 807 Mixed 14 139,484,309 141,719,266 1.64E-08 ADAM8
CNVR 862 Mixed 15 137,417,592 140,139,156 1.07E-03  
Canadian Duroc CNVR 488 Gain 8 97,990,916 99,088,450 7.24E-03  
  1. 1CNVRs ID in boldface represents the CNVR had pleiotropic effects on growth and fatness traits. 2Gain: duplications; Loss: deletions; Mixed: Gain and Loss occurring in the same region. 3P-value in boldface: genome-wide significant; P-value not in boldface: suggestive significant