Host | Hours post inoculation (hpi) | Total raw read pairs | Trimmomatic reads retention (%) | BBSplit reads separation | |
---|---|---|---|---|---|
S. sclerotiorum | C. arietinum | ||||
MR | 6 | 67,354,385 | 98.7 | 1,207,201 (1.8%) | 66,147,184 (98.2%) |
12 | 68,680,857 | 98.76 | 5,929,006 (8.6%) | 62,751,851 (91.4% | |
24 | 61,114,985 | 98.91 | 28,078,637 (45.9%) | 33,036,348 (54.1%) | |
48 | 56,616,306 | 98.85 | 40,566,767 (71.7%) | 16,049,538 (28.3%) | |
72 | 63,109,260 | 98.92 | 39,012,318 (61.8%) | 24,096,941 (38.2%) | |
S | 6 | 58,025,893 | 98.4 | 414,371 (0.7%) | 57,611,521 (99.2%) |
12 | 72,896,961 | 98.4 | 1,851,043 (2.5%) | 71,045,918 (97.5) | |
24 | 54,049,381 | 98.4 | 18,414,027 (31%) | 35,635,354 (65.9%) | |
48 | 60,727,165 | 98.5 | 36,714,863 (60.4%) | 24,012,301 (39.5%) | |
72 | 57,636,636 | 98.5 | 39,273,084 (68.1%) | 18,363,551 (31.9%) | |
 |  |  | **20, 961,027 | **40,875,050 | |
In vitro | 0 | 56,566, 082 | 96.8 | 53,907,476 (95.3%) | NA |