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Table 1 Summary of the Illumina sequence reads generated by RNA – seq obtained from inoculation of a moderately resistant (MR) chickpea line PBA HatTrick and a susceptible (S) chickpea line Kyabra. The values for each time point are the averages of the three biological replicates

From: Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines

Host Hours post inoculation (hpi) Total raw read pairs Trimmomatic reads retention (%) BBSplit reads separation
S. sclerotiorum C. arietinum
MR 6 67,354,385 98.7 1,207,201 (1.8%) 66,147,184 (98.2%)
12 68,680,857 98.76 5,929,006 (8.6%) 62,751,851 (91.4%
24 61,114,985 98.91 28,078,637 (45.9%) 33,036,348 (54.1%)
48 56,616,306 98.85 40,566,767 (71.7%) 16,049,538 (28.3%)
72 63,109,260 98.92 39,012,318 (61.8%) 24,096,941 (38.2%)
S 6 58,025,893 98.4 414,371 (0.7%) 57,611,521 (99.2%)
12 72,896,961 98.4 1,851,043 (2.5%) 71,045,918 (97.5)
24 54,049,381 98.4 18,414,027 (31%) 35,635,354 (65.9%)
48 60,727,165 98.5 36,714,863 (60.4%) 24,012,301 (39.5%)
72 57,636,636 98.5 39,273,084 (68.1%) 18,363,551 (31.9%)
    **20, 961,027 **40,875,050
In vitro 0 56,566, 082 96.8 53,907,476 (95.3%) NA
  1. **averages number of reads