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Table 1 Summary of the Illumina sequence reads generated by RNA – seq obtained from inoculation of a moderately resistant (MR) chickpea line PBA HatTrick and a susceptible (S) chickpea line Kyabra. The values for each time point are the averages of the three biological replicates

From: Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines

Host

Hours post inoculation (hpi)

Total raw read pairs

Trimmomatic reads retention (%)

BBSplit reads separation

S. sclerotiorum

C. arietinum

MR

6

67,354,385

98.7

1,207,201 (1.8%)

66,147,184 (98.2%)

12

68,680,857

98.76

5,929,006 (8.6%)

62,751,851 (91.4%

24

61,114,985

98.91

28,078,637 (45.9%)

33,036,348 (54.1%)

48

56,616,306

98.85

40,566,767 (71.7%)

16,049,538 (28.3%)

72

63,109,260

98.92

39,012,318 (61.8%)

24,096,941 (38.2%)

S

6

58,025,893

98.4

414,371 (0.7%)

57,611,521 (99.2%)

12

72,896,961

98.4

1,851,043 (2.5%)

71,045,918 (97.5)

24

54,049,381

98.4

18,414,027 (31%)

35,635,354 (65.9%)

48

60,727,165

98.5

36,714,863 (60.4%)

24,012,301 (39.5%)

72

57,636,636

98.5

39,273,084 (68.1%)

18,363,551 (31.9%)

   

**20, 961,027

**40,875,050

In vitro

0

56,566, 082

96.8

53,907,476 (95.3%)

NA

  1. **averages number of reads