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NCBI Entrez Databases
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http://www.ncbi.nlm.nih.gov
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NCBI Entrez Protein Database
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http://www.ncbi.nlm.nih.gov/protein
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NCBI Entrez Taxonomy Database
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http://www.ncbi.nlm.nih.gov/taxonomy
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STRING Viruses database
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http://viruses.string-db.org/; version 11.0
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CD-HIT
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http://weizhongli-lab.org/cd-hit/
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E-Utilities esearch-efetch
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https://www.ncbi.nlm.nih.gov/books/NBK25500/#chapter1.Demonstration_Programs
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entrezEsearch
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https://github.com/gwatiyapJ/SiMiLyG
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kmerslicer
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https://github.com/gwatiyapJ/SiMiLyG
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Unipro UGENE tools
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http://ugene.net/
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UniProt Retrieving and ID Mapping tool
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https://www.uniprot.org/uploadlists/
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CateGorizer
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https://www.animalgenome.org/tools/catego/
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Unix utilities
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https://unix.stackexchange.com/
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Tutorial 1: Notes on how to use R for doing statistical analysis and graphics
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https://cran.r-project.org/manuals.html
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Tutorial 2: Unipro UGENE Manual Version 37, 2020. Consists of user guide to bioinformatics tools for alignments, genome sequencing, data analysis, and amino acids sequence visualization, among others.
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http://ugene.net/downloads/UniproUGENE_UserManual.pdf
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Tutorial 3: User’s guides on implementation for removing duplicates sequences and generating representative sequences
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http://www.bioinformatics.org/cd-hit/cd-hit-user-guide.pdf
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Tutorial 4: Webinar: Introduction to NCBI’s E-utilities API
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https://www.youtube.com/watch?v=iCFVVexp30o&t=2561s
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