A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences

Table 4 Sample of amino acid repeats (AARs) within the Flaviviridae-human shared sequences

Direct Repeat						Indirect Repeat				Simple Repeat	Non- Tandem Repeat (NTR)
3-mer	No. of Matches	4-mer	No. of Matches	5-mer	No. of Matches	3-mer	No. of Matches	4-mer	No. of Matches	9-mer	9-mer
GLL	31	AAAG	14	GGGSG	28	AAA	96	ELKQ	6	GGGGGGGGG	ENVKAKIQD
GVD	17	GGGG	47	GSGGG	27	APA	10	LIKV	3	HHHHHHHHH	ESTLHLVLR
HHH	313	GIPP	13	HHHHH	222	DGK	7				GMQIFVKTL
LLL	293	GRAA	4	LLLLA	18	GLL	31				GRTLSDYNI
LLS	47	HHHH	222	LLLLL	80	LLA	48				HLVLRLRGG
LPP	23	LIGL	2	LLLSL	17	LLL	293				IQKESTLHL
LVL	40	LLGL	19	PNPPKT	4	PLS	16				KESTLHLVL
PPQ	16	LLLL	159	PPPPP	34	SAA	21				LHLVLRLRG
PPR	30	LLSL	26	SHHHH	25	SPR	12				NIQKESTLH
RRL	13	LPVL	10	SSGLV	5	VAA	17				STLHLVLRL

ISSN: 1471-2164