Skip to main content

Table 4 Sample of amino acid repeats (AARs) within the Flaviviridae-human shared sequences

From: A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences

Direct Repeat Indirect Repeat Simple Repeat Non- Tandem Repeat (NTR)
3-mer No. of Matches 4-mer No. of Matches 5-mer No. of Matches 3-mer No. of Matches 4-mer No. of Matches 9-mer 9-mer
GLL 31 AAAG 14 GGGSG 28 AAA 96 ELKQ 6 GGGGGGGGG ENVKAKIQD
GVD 17 GGGG 47 GSGGG 27 APA 10 LIKV 3 HHHHHHHHH ESTLHLVLR
HHH 313 GIPP 13 HHHHH 222 DGK 7     GMQIFVKTL
LLL 293 GRAA 4 LLLLA 18 GLL 31     GRTLSDYNI
LLS 47 HHHH 222 LLLLL 80 LLA 48     HLVLRLRGG
LPP 23 LIGL 2 LLLSL 17 LLL 293     IQKESTLHL
LVL 40 LLGL 19 PNPPKT 4 PLS 16     KESTLHLVL
PPQ 16 LLLL 159 PPPPP 34 SAA 21     LHLVLRLRG
PPR 30 LLSL 26 SHHHH 25 SPR 12     NIQKESTLH
RRL 13 LPVL 10 SSGLV 5 VAA 17     STLHLVLRL