Single nucleotide polymorphisms reveal genetic diversity in New Mexican chile peppers (Capsicum spp.)

BMC Genomics

Table 2 Genetic diversity indices for the Capsicum population

Pop	Species	Num^a	Eff_Num	H_o	H_s	G_is	π	θ	Tajima’s D	PIC
I	C. annuum	1.94	1.21	0.04	0.13	0.70	0.12	0.13	-0.19	0.10
II	C. baccatum & C. chacoense	1.23	1.07	0.04	0.06	0.34	0.06	0.09	-2.39	0.02
III	C. frutescens	1.27	1.12	0.05	0.08	0.44	0.08	0.11	-1.41	0.05
IV	C. chinense	1.90	1.31	0.10	0.20	0.51	0.17	0.19	-0.39	0.12
Whole pop.		2.00	1.14	0.06	0.12	0.55	0.33	0.18	2.85	0.30

^aNum- Number of alleles; Eff_Num Effective number of alleles; H_oObserved heterozygosity. H_sGene diversity; G_isInbreeding coefficient; π Observed nucleotide diversity; θ Expected nucleotide diversity. PIC Polymorphism information content

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