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Table 3 information for significant SNPs associated with feeding behavior traits

From: Genome-wide association study reveals novel loci associated with feeding behavior in Pekin ducks

Trait N Chr Position MAF Beta P-value CPV(%) Candidate gene Distance
DFI 5 1 105,141,360 0.119 −3.11E-01 1.82E-06 1.46 CLMP Within (intron)
   2 56,076,894 0.053 −4.75E-01 1.07E-06 1.34 RBBP8 13.284 kb upstream
   2 160,342,459 0.182 −2.63E-01 3.49E-06 1.01 SNAP47 1.798 kb upstream
   8 7,821,240 0.058 −4.58E-01 1.59E-06 1.56 DENND1B Within (intron)
   21 1,442,045 0.051 4.86E-01 1.88E-06 1.67 ARHGEF10L 28.32 kb downstream
NM 8 2 122,248,468 0.302 −2.25E-01 3.27E-06 2.19 UBE2E2 Within (intron)
   2 122,253,614 0.373 −2.56E-01 3.34E-08 2.64 UBE2E2 Within (intron)
   2 122,289,379 0.291 −2.51E-01 2.31E-07 2.6 UBE2E2 Within (intron)
   2 122,297,710 0.354 −2.33E-01 6.52E-07 2.27 UBE2E2 Within (intron)
   2 122,302,381 0.302 −2.74E-01 1.21E-08 3.41 UBE2E2 Within (intron)
   2 127,662,769 0.227 −2.47E-01 4.41E-06 1.8 NPVF 78.894 kb upstream
   3 49,064,869 0.311 2.35E-01 2.66E-06 1.49 CD164 1.564 kb upstream
   4 35,340,778 0.106 −3.39E-01 3.37E-06 1.63 OTUD4 Within (intron)
MFI 9 2 6,590,112 0.380 −2.09E-01 4.36E-06 2.12 KHDRBS3 425.206 kb upstream
   2 122,248,468 0.302 2.29E-01 1.67E-06 2.7 UBE2E2 Within (intron)
   2 122,253,614 0.373 2.39E-01 1.81E-07 2.72 UBE2E2 Within (intron)
   2 122,289,379 0.291 2.42E-01 4.75E-07 2.63 UBE2E2 Within (intron)
   2 122,297,710 0.354 2.43E-01 1.47E-07 2.74 UBE2E2 Within (intron)
   2 122,302,381 0.302 2.35E-01 8.15E-07 2.73 UBE2E2 Within (intron)
   2 122,412,594 0.241 2.35E-01 3.05E-06 2.15 ZNF385D 59.762 kb upstream
   3 66,002,589 0.251 −2.39E-01 2.63E-06 2.21 ARID1B 226.373 kb downstream
   37 1,532,297 0.086 3.76E-01 4.56E-06 1.96 LOC113841483 0.38 kb upstream
MD 10 1 6,999,701 0.058 −4.34E-01 8.26E-07 3.14 USP6NL Within (intron)
   2 37,351,206 0.270 −2.33E-01 8.7E-07 1.38 BHLHE22 17.535 kb downstream
   2 43,705,118 0.411 −2.11E-01 1.58E-06 1.62 CDH2 Within (intron)
   2 122,248,468 0.302 2.07E-01 4.7E-06 1.93 UBE2E2 Within (intron)
   2 122,289,379 0.291 2.14E-01 2.4E-06 1.63 UBE2E2 Within (intron)
   2 122,292,748 0.318 2.29E-01 2.45E-07 2.38 UBE2E2 Within (intron)
   2 122,302,381 0.302 2.26E-01 5.23E-07 2.46 UBE2E2 Within (intron)
   2 127,662,769 0.227 2.39E-01 2.2E-06 1.97 NPVF 78.894 kb upstream
   14 5,023,928 0.154 2.72E-01 3.04E-06 1.8 GFPT2 2.353 kb downstream
   14 18,817,706 0.078 3.64E-01 3.4E-06 2.21 GABRB2 18.24 kb downstream
TFT 8 1 129,679,448 0.069 −3.98E-01 1.2E-06 2.68 EGFL6 Within (intron)
   1 130,266,111 0.122 −3.09E-01 2.02E-06 2.35 FRMPD4 Within (intron)
   2 40,465,055 0.177 2.70E-01 8.85E-07 2.32 PENK 83.343 kb upstream
   2 43,705,118 0.410 −2.06E-01 3.48E-06 1.69 CDH2 Within (intron)
   3 29,665,827 0.112 3.18E-01 8.11E-07 2.65 EYS 221.440 kb downstream
   4 74,555,149 0.189 −2.58E-01 1.45E-06 2.07 FAM53A 46.599 kb downstream
   5 33,918,738 0.136 −2.77E-01 4.1E-06 2.07 EHD4 15.44 kb upstream
   14 4,185,488 0.108 3.15E-01 3.07E-06 2.45 KLHL3 180.963 kb upstream
  1. Abbreviations: DFI, daily feed intake; NM, number of meals per day; MFI, meal feed intake; MD, meal duration per time; TFT, total feeding time. Chr, chromosome; MAF, minor allele frequency; Beta, the estimate coefficient; CPV(%), contribution of phenotypic variance explained by the SNP