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Table 3 information for significant SNPs associated with feeding behavior traits

From: Genome-wide association study reveals novel loci associated with feeding behavior in Pekin ducks

Trait

N

Chr

Position

MAF

Beta

P-value

CPV(%)

Candidate gene

Distance

DFI

5

1

105,141,360

0.119

−3.11E-01

1.82E-06

1.46

CLMP

Within (intron)

  

2

56,076,894

0.053

−4.75E-01

1.07E-06

1.34

RBBP8

13.284 kb upstream

  

2

160,342,459

0.182

−2.63E-01

3.49E-06

1.01

SNAP47

1.798 kb upstream

  

8

7,821,240

0.058

−4.58E-01

1.59E-06

1.56

DENND1B

Within (intron)

  

21

1,442,045

0.051

4.86E-01

1.88E-06

1.67

ARHGEF10L

28.32 kb downstream

NM

8

2

122,248,468

0.302

−2.25E-01

3.27E-06

2.19

UBE2E2

Within (intron)

  

2

122,253,614

0.373

−2.56E-01

3.34E-08

2.64

UBE2E2

Within (intron)

  

2

122,289,379

0.291

−2.51E-01

2.31E-07

2.6

UBE2E2

Within (intron)

  

2

122,297,710

0.354

−2.33E-01

6.52E-07

2.27

UBE2E2

Within (intron)

  

2

122,302,381

0.302

−2.74E-01

1.21E-08

3.41

UBE2E2

Within (intron)

  

2

127,662,769

0.227

−2.47E-01

4.41E-06

1.8

NPVF

78.894 kb upstream

  

3

49,064,869

0.311

2.35E-01

2.66E-06

1.49

CD164

1.564 kb upstream

  

4

35,340,778

0.106

−3.39E-01

3.37E-06

1.63

OTUD4

Within (intron)

MFI

9

2

6,590,112

0.380

−2.09E-01

4.36E-06

2.12

KHDRBS3

425.206 kb upstream

  

2

122,248,468

0.302

2.29E-01

1.67E-06

2.7

UBE2E2

Within (intron)

  

2

122,253,614

0.373

2.39E-01

1.81E-07

2.72

UBE2E2

Within (intron)

  

2

122,289,379

0.291

2.42E-01

4.75E-07

2.63

UBE2E2

Within (intron)

  

2

122,297,710

0.354

2.43E-01

1.47E-07

2.74

UBE2E2

Within (intron)

  

2

122,302,381

0.302

2.35E-01

8.15E-07

2.73

UBE2E2

Within (intron)

  

2

122,412,594

0.241

2.35E-01

3.05E-06

2.15

ZNF385D

59.762 kb upstream

  

3

66,002,589

0.251

−2.39E-01

2.63E-06

2.21

ARID1B

226.373 kb downstream

  

37

1,532,297

0.086

3.76E-01

4.56E-06

1.96

LOC113841483

0.38 kb upstream

MD

10

1

6,999,701

0.058

−4.34E-01

8.26E-07

3.14

USP6NL

Within (intron)

  

2

37,351,206

0.270

−2.33E-01

8.7E-07

1.38

BHLHE22

17.535 kb downstream

  

2

43,705,118

0.411

−2.11E-01

1.58E-06

1.62

CDH2

Within (intron)

  

2

122,248,468

0.302

2.07E-01

4.7E-06

1.93

UBE2E2

Within (intron)

  

2

122,289,379

0.291

2.14E-01

2.4E-06

1.63

UBE2E2

Within (intron)

  

2

122,292,748

0.318

2.29E-01

2.45E-07

2.38

UBE2E2

Within (intron)

  

2

122,302,381

0.302

2.26E-01

5.23E-07

2.46

UBE2E2

Within (intron)

  

2

127,662,769

0.227

2.39E-01

2.2E-06

1.97

NPVF

78.894 kb upstream

  

14

5,023,928

0.154

2.72E-01

3.04E-06

1.8

GFPT2

2.353 kb downstream

  

14

18,817,706

0.078

3.64E-01

3.4E-06

2.21

GABRB2

18.24 kb downstream

TFT

8

1

129,679,448

0.069

−3.98E-01

1.2E-06

2.68

EGFL6

Within (intron)

  

1

130,266,111

0.122

−3.09E-01

2.02E-06

2.35

FRMPD4

Within (intron)

  

2

40,465,055

0.177

2.70E-01

8.85E-07

2.32

PENK

83.343 kb upstream

  

2

43,705,118

0.410

−2.06E-01

3.48E-06

1.69

CDH2

Within (intron)

  

3

29,665,827

0.112

3.18E-01

8.11E-07

2.65

EYS

221.440 kb downstream

  

4

74,555,149

0.189

−2.58E-01

1.45E-06

2.07

FAM53A

46.599 kb downstream

  

5

33,918,738

0.136

−2.77E-01

4.1E-06

2.07

EHD4

15.44 kb upstream

  

14

4,185,488

0.108

3.15E-01

3.07E-06

2.45

KLHL3

180.963 kb upstream

  1. Abbreviations: DFI, daily feed intake; NM, number of meals per day; MFI, meal feed intake; MD, meal duration per time; TFT, total feeding time. Chr, chromosome; MAF, minor allele frequency; Beta, the estimate coefficient; CPV(%), contribution of phenotypic variance explained by the SNP
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BMC Genomics

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