Table 3 Quality metrics of transcripts in the ovary of Changshun green-shell laying hen
Samp | Raw reads | Clean reads | Clean bases | Q20 (%) | Q30 (%) | GC (%) | N (ppm) |
|---|---|---|---|---|---|---|---|
LP-1 | 45,772,004 | 45,672,822 | 6,793,131,642 | 97.90 | 93.84 | 49.52 | 4.74 |
LP-2 | 45,989,900 | 45,890,650 | 6,822,515,847 | 97.82 | 93.66 | 49.61 | 4.69 |
LP-3 | 45,847,818 | 45,755,138 | 6,808,443,826 | 98.15 | 94.48 | 49.82 | 4.77 |
LP-4 | 43,101,534 | 43,023,412 | 6,400,232,494 | 98.07 | 94.20 | 50.19 | 5.75 |
HP-1 | 47,619,274 | 47,511,052 | 7,060,329,437 | 98.19 | 94.65 | 52.24 | 4.68 |
HP-2 | 39,165,330 | 39,090,800 | 5,819,349,384 | 98.13 | 94.39 | 49.47 | 4.72 |
HP-3 | 42,022,532 | 41,943,412 | 6,246,359,132 | 97.79 | 93.55 | 49.11 | 5.73 |
HP-4 | 44,730,920 | 44,654,676 | 6,649,244,662 | 98.05 | 94.16 | 50.24 | 5.73 |