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Table 3 Quality metrics of transcripts in the ovary of Changshun green-shell laying hen

From: Transcriptome analysis of ovary tissues from low- and high-yielding Changshun green-shell laying hens

Samp Raw reads Clean reads Clean bases Q20 (%) Q30 (%) GC (%) N (ppm)
LP-1 45,772,004 45,672,822 6,793,131,642 97.90 93.84 49.52 4.74
LP-2 45,989,900 45,890,650 6,822,515,847 97.82 93.66 49.61 4.69
LP-3 45,847,818 45,755,138 6,808,443,826 98.15 94.48 49.82 4.77
LP-4 43,101,534 43,023,412 6,400,232,494 98.07 94.20 50.19 5.75
HP-1 47,619,274 47,511,052 7,060,329,437 98.19 94.65 52.24 4.68
HP-2 39,165,330 39,090,800 5,819,349,384 98.13 94.39 49.47 4.72
HP-3 42,022,532 41,943,412 6,246,359,132 97.79 93.55 49.11 5.73
HP-4 44,730,920 44,654,676 6,649,244,662 98.05 94.16 50.24 5.73
  1. Samp Sample name; Q20 sequencing error rates lower than 1 %; Q30 sequencing error rates lower than 0.1 %; GC the percentage of G and C bases in all transcripts; N unknown base; LP low egg production group; HP high egg production group