Skip to main content

Table 9 MATCH program output results showing predicted transcription factors binding site (TFBS) of commonly differentially expressed uni-genes with no BLAST hits, according to the uni-genes DNA sequences. The table displays the core match score, matrix match score, predicted transcription factor with its respective TFBS DNA sequence and UniProt ID. Only 1_CL2766Contig of the downregulated uni-genes was reported with no match against the TRANSFAC database

From: Functional prediction of de novo uni-genes from chicken transcriptomic data following infectious bursal disease virus at 3-days post-infection

Uni-gene

DE

Core match

Matrix match

Sequence

Transcription Factor

Uniprot ID

1_CL12Contig16

Up

1

0.931

ccgtaCTTCCtcttcc

Elk-1

P19419

1_CL2624Contig1

Up

1

0.965

ccgccgGCTTTaatt

Barbie box

n/a

1_CL41Contig6

Up

1

1

tgACGTCa

c-Jun / AP-1

P05627

1_CL1576Contig1

Down

0.997

0.893

cctcctttctCTTCT

HSF1

P10961

1_CL1679Contig3

Down

1

1

tGACGTta

c-Jun / AP-1

P05627

1_CL2484Contig1

Down

1

1

cgtgACCCC

CF-1 / USP

P20153

1_CL2572Contig1

Down

0.953

0.983

gttCCGGAacgttct

HSF1

P10961

1_CL2766Contig1

Down

–

–

–

–

–