Fig. 2

Representative whole-genome alignments of F. xylarioides and F. oxysporum f. sp. lycopersici. Representative whole-genome alignments of F. xylarioides strain robusta277 against the 15 F. oxysporum f. sp. lycopersici chromosomes, including the 4 mobile chromosomes, annotated in red, and the 11 core chromosomes shared with sister Fusarium species [9]. Each dot represents chromosomal correspondence, with absences representing the absent Fol chromosomes. Alignments for each F. xylarioides genome are in Additional file 2: Figure S2. Genomes were aligned using Mummer 4.0.0 (http://mummer.sourceforge.net/) with outputs processed using Dotprep.py before visualizing using Dot in DNA Nexus (https://dnanexus.github.io/dot/). Blue indicates forward alignments, green indicates reverse alignments, orange indicates repetitive alignments