Table 1 Genome statistics for sequenced F. xylarioides strains
Name | Coffea674 | Coffea659 | Robusta277 | Robusta254 | Arabica563 | Arabica908 |
|---|---|---|---|---|---|---|
Strain number | IMI392674 CBS258.52 | IMI127659i DSMZ62457 | IMI392277 | IMI392254 | IMI389563 | IMI375908i |
Year | 1951 | 1955 | 2003 | 1997 | 2002 | 1997 |
Origin | Cote d’Ivoire | Central African Republic | Tanzania | Uganda | Ethiopia | Ethiopia |
Host | Coffea | C. excelsa | C. c. robusta | C. c. robusta | C. arabica | C. arabica |
Genome Size Mb | 57.2 | 59.6 | 61.3 | 60.3 | 63.4 | 62.6 |
No. scaffolds | 3969 | 4843 | 5484 | 5369 | 7078 | 7264 |
N50 bp | 62845 | 55667 | 54978 | 56291 | 42705 | 41762 |
BUSCO % | 100 | 100 | 100 | 100 | 100 | 100 |
GC % | 43.3 | 43.5 | 43.1 | 43.1 | 42.1 | 42.2 |
Coding Genes | 14529 | 14732 | 14852 | 14588 | 14589 | 14654 |
Coverage % | 36 | 35 | 34 | 34 | 33 | 33 |