Fig. 2

Taxonomic classification of cumulative batch 30 from each enrichment time point. For clarity, only the short read MegaHit and long read metaFlye assemblies were plotted (short read assembly results mirrored short read hybrid assemblies and long read assemblies mirrored long read hybrid assemblies). a The total bp of contigs per species (must have a minimum of 5000 bp) classified by Kraken. b Species in sample, excluding L. monocytogenes, R. mucilaginosa and unclassified sequences highlights how the short read assemblies capture more species than the long read assemblies