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Table 4 Mean assembly statistics (C30 at each enrichment time) for each assembly approach

From: Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Assembly tool Runtime Total assembly length Number of contigs N50 Longest contig
metaFlye (long read) 40.6 4,291,417 27 3,056,133 3,056,133
Canu (long read) 98 3,470,967 21 1,754,979 2,071,553
Redbean (long read) 1 3,474,503 35 2,123,769 2,131,343
MegaHit (short read) 32.8 7,972,605 7315 97,577 672,182
metaFlye+Racon (long read) 41.6 4,261,624 27 3,039,238 3,039,238
HybridSpades (short read hybrid) 22.6 11,681,048 19,285 112,850 686,270
OperaMS (no reference) (short read hybrid) 12.2 10,340,211 13,921 105,382 655,220
OperaMS (reference) (short read hybrid) 13.6 10,363,273 13,913 205,943 1,919,416
metaFlye+Racon+Pilon (long read hybrid) 41.6 4,271,759 27 3,041,086 3,041,086
metaFlye+Racon+ntEdit (long read hybrid) 41.6 4,274,358 27 3,041,440 3,041,440