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Table 3 Gene Functional Classification Result (PANTHER 14.1) of over-expressed genes in ST cells from SNEB animals. Main pathways and ontology annotation groups enriched are shown (over-representation statistical test)

From: Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells

PANTHER Classification

fold Enrichment

FDR

genes

PANTHER Pathways

 Inflammation mediated by chemokine and cytokine signaling pathway (P00031)

2.15

5.26E-03

ACTA2, JUNB, CAMK2B, CCL11, MYH11, ACTG2,, ITPR2, PRKCZ, MYH14, ACTA1, PLCB4, MYLK, PAK4, PLCH1, CCL4, CCL3

 Wnt signaling pathway (P00057)

2.1

2.58E-02

ACTG2, FZD5, PLCB4, CDH3, PRKCZ, CDH1, ACTA1, CTBP2, ITPR2, FRZB, ANKRD6, ACTA2

 Cadherin signaling pathway (P00012)

2.21

3.43E-02

ACTA2, CDH3, ACTG2, FRK, FZD5, ACTA1, CDH1, ERBB3

 Integrin signaling pathway (P00034)

1.72

1.51E-02

ACTG2, ITGB4, FRK, RAP2A, ITGB6, FLNA, COL4A6, ACTA1, FLNB, COL4A5, ACTA2

 Gap junction trafficking and regulation (R-BTA-157858)

4.98

1.16E-02

GJB4, GJB1, GJB3, GJB5

 Cytoskeletal regulation by Rho GTPase (P00016)

3

7.29E-03

ACTA2, MYH11, ACTG2, ARHGAP1, MYH14, ACTA1, MYLK, PAK4

PANTHER Biological Process

 cytoskeleton-dependent intracellular transport (GO:0030705)

3.49

6.77E-03

RP1, ACTA2, SPAG17, ACTG2, BICDL2, JHY, JHY, ACTA1, TEKT4, CENPJ, DYNC1I1, CFAP54, CCDC39, DRC1, BICDL1

 cilium movement (GO:0003341)

7.88

7.77E-03

DNAH7, ZBBX, TACR1, TEKT4, CCDC39, DNAH11, DRC1

PANTHER Molecular Function

 transmembrane transporter activity (GO:0022857)

1.55

1.54E-02

LRRC26, SLC45A2, P2RX3, LRRC38, KCNG1, SLC36A2, SLC38A11, KCNMB1, CLCN3, GRIN1, ATP1B1, ATP2B4, SLC18A2, SLC5A9, SLC29A2, CACNB2, GRIA3, KCNF1, SLC5A10, SGK2, LRRIQ1, ATP6V1G3, SLC35A3, SLC4A7, SLC10A1, KCNH2, TMC5, SLC31A2, SLC34A2