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Table 1 Rice miRNAs differentially expressed at 3 days after inoculation with M. graminicola as well as their targets according to our degradome sequencing data. Degradome sequencing was performed to evaluate the amount of cleaved miRNA target regions in the investigated tissues. Degradome Log2 Fold Change denotes the change in the number of cleaved target fragments in galls versus root tips.’–‘denotes that the degradome data did not indicate significant target cleaving by miRNAs in galls and/or roots

From: Non-coding RNAs in the interaction between rice and Meloidogyne graminicola

ID miRNA

miRNA Log2 Fold change

ID Target

Target Description

Degradome Log2 Fold Change

osa-miR398b

−4.48

–

–

–

osa-miR169f.1

−4.17

Os03g0696300

NUCLEAR FACTOR-Y subunit A4

−3.10

Os03g0174900

NUCLEAR FACTOR-Y subunit A1

−3.67

Os12g0618600

NUCLEAR FACTOR-Y subunit A10

−1.74

osa-miR397b

−2.27

–

–

–

osa-miR6255

−2.22

–

–

–

osa-miR164a

−2.07

Os04g0460600

NAC domain-containing protein 004

−3.78

osa-miR408-3p

−2.07

Os08g0482700

Cupredoxin domain containing protein

−4.78

osa-miR164d

−1.80

Os04g0460600

NAC domain-containing protein 004

−3.78

osa-miR3979-3p

−1.62

–

–

–

osa-miR166a-3p

−1.33

Os10g0480200

rice homeobox gene 9

0.08

osa-miR166j-3p

−1.21

Os10g0480200

rice homeobox gene 9

0.08

osa-miR167g

−1.15

–

–

–

osa-miR319b

1.62

Os12g0616400

PROLIFERATING CELL FACTOR 8

2.03

osa-miR1850.2

2.02

–

–

–

osa-miR1850.1

2.30

–

–

–

osa-miR5159

2.38

–

–

–

osa-miR319a-3p.2-3p

3.59

Os12g0616400

PROLIFERATING CELL FACTOR 8

2.03