Table 3 Protein coding genes putatively regulated by downregulated siRNAs from Arabidopsis galls induced by M. javanica, or micro-dissected GCs at 3dpi versus control uninfected tissues, in TEs within their promoters. LFC Log2 Fold Change, TE transposable element, GC giant cells
From: Non-coding RNAs in the interaction between rice and Meloidogyne graminicola
Target | Description | LFC target gene | siRNA | LFC siRNA |
|---|---|---|---|---|
AT1G29980 | choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) | 2,42 (GC) | t1095805 | −2.15707522 |
AT1G47655 | Dof-type zinc finger domain-containing protein | 0,96 (GC) | t0296032 | −1.639952 |
AT2G22670 | IAA8: Indoleacetic acid-induced protein 8 | 1,15 (GC) | t0633011 | −1.054989 |
AT2G22670 | IAA8: Indoleacetic acid-induced protein 8 | 1,15 (GC) | t0018542 | −1.303729 S14 |
AT2G22670 | IAA8: Indoleacetic acid-induced protein 8 | 1,15(GC) | t1235988 | −1.0549894 |
AT3G16520 | UDP-glucosyl transferase family protein | 2,19(GC) | t0912363 | −1.6983221 |
AT3G16520 | UDP-glucosyl transferase family protein | 2,19 (GC) | t0001440 | −1.09983828 |
AT5G16580 | beta glucosidase 2 | 0,97 (GC) | t0452534 | −1.639952 |
AT5G49160 | MET1 | 2,09 (GC) | t0659684 | −1.05498941 |
AT5G66050 | Wound-responsive family protein | 0,92 (GC) | t0006768 | −1.153983978 |
AT1G17480 | IQ-domain 7 | 1,11 (Gall) | t0257580 | −2.15707522 |
AT2G05910 | LURP-one-like protein | 1,38 (Gall) | t0813649 | −1.0549894 |
AT2G22620 | Rhamnogalacturonate lyase family protein (RGIL6) | 1,32 (Gall) | t0911003 | −1.0549894 |
AT3G29970 | B12D protein | 3,31 (Gall) | t0840160 | −1.054989 |
AT4G10265 | Wound-responsive protein (WIP3) | 1,67 (Gall) | t0092685 | −2.03507929 |
AT4G14980 | DC1 domain-containing protein | 2,04 (Gall) | t0002719 | −1.04626753 |
AT4G14980 | DC1 domain-containing protein | 2,04 (Gall) | t1179332 | −1.05498941 |