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Table 2 PERMANOVA results of the beta diversity calculated using Bray-Curtis dissimilarity

From: Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets

A QIIME1 Df SumOfSqs R2 F Pr(>F)
V12 - V34 1 2.063104472 0.039957174 272.7097774 0.001
Participants 191 48.12483416 0.932057689 33.3054547 0.001
Residual 191 1.444953525 0.027985136   
Total 383 51.63289216 1   
B QIIME2 Df SumOfSqs R2 F Pr(>F)
V12 – V34 1 1.34266081 0.02577232 175.865223 0.001
Participant 191 49.2961408 0.94623742 33.8059551 0.001
Residuals 191 1.45820879 0.02799026   
Total 383 52.0970104 1