Fig. 5
Graphia clustering of RNA-Seq data across all samples. Each node (circle) in the graph represents a gene, and each edge (line) a correlation exceeding a threshold (rho ≥ 0.93). MCL cluster granularity was set to 1.5. The most prominent clustering is by bird line with two main components being identified: component 1 - genes expressed at higher levels in line N (A) and component 2 - genes expressed at higher levels in line 61 (B). Colours indicate clusters of genes which have a similar expression pattern. (C) and (D) show the number of genes from each cluster in individual birds, identified by matching colours in corresponding components