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Table 3 Microsatellite distribution as percent motif abundance (%) among 14 genomes

From: Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions

Species

Abbreviation

Genomic region

Mono- (1-nt)

Di- (2-nt)

Tri- (3-nt)

Tetra- (4-nt)

Penta- (5-nt)

Hexa- (6-nt)

D. rerio

Drer

all

20.54

37.82

13.85

24.08

3.50

0.21

intergenic regions

2.10

5.66

1.79

3.42

0.40

0.02

introns

18.06

31.55

11.72

20.54

3.10

0.18

exons

0.39

0.60

0.34

0.12

0.01

0.00

O. niloticus

Onil

all

29.61

42.73

11.68

11.45

4.20

0.34

intergenic regions

1.91

4.23

1.15

0.89

0.53

0.07

introns

25.15

36.73

9.01

10.02

3.55

0.24

exons

2.56

1.77

1.53

0.53

0.12

0.02

O. latipes

Olat

all

52.77

17.49

10.81

15.18

3.42

0.33

intergenic regions

6.26

2.19

1.37

2.21

0.55

0.05

introns

45.06

14.57

7.54

12.56

2.81

0.27

exons

1.45

0.73

1.90

0.40

0.06

0.02

T. rubripes

Trub

all

26.32

48.03

9.60

12.26

2.93

0.85

intergenic regions

7.19

13.91

2.79

4.15

1.11

0.28

introns

17.07

32.71

5.40

7.81

1.78

0.52

exons

2.06

1.42

1.42

0.30

0.04

0.05

N. furzeri

Nfur

all

14.71

54.15

11.55

16.2

2.91

0.48

intergenic regions

4.53

17.11

3.83

5.66

1.13

0.16

introns

9.87

37.05

7.25

10.79

1.85

0.34

exons

0.57

1.25

0.73

0.24

0.04

0.01

O.mykiss

Omyk

all

14.91

64.33

6.12

11.59

2.29

0.75

intergenic regions

0.26

1.27

0.24

0.3

0.11

0.04

introns

14.17

61.7

5.27

11.22

2.18

0.7

exons

0.57

1.27

0.63

0.24

0.02

0.02

A. mexicanus

Amex

all

21.75

57

7.29

10.88

2.17

0.28

intergenic regions

1.05

3.26

0.53

0.77

0.16

0.04

introns

20.03

52.99

6.84

9.89

1.97

0.23

exons

0.68

0.81

0.52

0.17

0.03

0.01

E. lucius

Eluc

all

19.51

65.18

5.03

9.49

0.49

0.31

intergenic regions

1.1

3.45

0.33

0.7

0.06

0.04

introns

17.19

60.03

3.92

8.54

0.42

0.26

exons

1.22

1.7

0.78

0.25

0.01

0.01

I. punctatus

Ipun

all

23.68

48

12.3

14.25

1.28

0.22

intergenic regions

1.17

3.05

0.82

0.89

0.09

0.02

introns

20.97

43.26

10.64

13.18

1.12

0.19

exons

1.52

1.71

0.82

0.45

0.07

0.01

C. semilaevis

Csem

all

31.05

39.78

15.25

11.11

1.85

0.96

intergenic regions

1.79

1.63

0.78

0.76

0.11

0.07

introns

27.47

37.29

12.76

9.72

1.66

0.8

exons

1.49

1.41

1.81

0.3

0.07

0.07

L. oculatus

Locu

all

34.99

21.5

34.92

5.66

2.93

2

intergenic regions

6.57

4.81

7.46

1.26

0.73

0.51

introns

24.71

15.27

23.44

4.06

2.05

1.36

exons

2.71

1.42

3.01

0.35

0.14

0.13

C. carpio

Ccar

all

37.18

36.12

10.7

12.51

3.15

0.34

intergenic regions

0.54

0.6

0.17

0.19

0.05

0.01

introns

36.2

35.16

10.2

12.22

3.08

0.33

exons

0.44

0.37

0.32

0.11

0.02

0.01

P. reticulata

Pret

all

46.3

29.54

9.69

12.69

1.48

0.31

intergenic regions

2.25

2.01

0.59

0.1

0.12

0.03

introns

40.47

26.13

7.47

11.34

1.27

0.24

exons

3.58

1.39

1.63

0.36

0.09

0.04

O.kisutch

Okis

all

12.85

67.38

4.61

12.15

2.31

0.7

intergenic regions

0.19

1.16

0.13

0.22

0.06

0.02

introns

12.29

65.73

4.17

11.84

2.23

0.68

exons

0.37

0.49

0.32

0.09

0.01

0.00