Table 4 Total numbers of Mono-, Di-, and Trinucleotide repeats in exons among 14 fish genomes
Repeated unit | O. latipes | D. rerio | O. niloticus | T. rubripes | E. lucius | L. oculatus | O. mykiss | C. carpio | I. punctatus | C. semilaevis | A. mexicanus | N. furzeri | P. reticulata | O. kisutch |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A | 1938 | 3830 | 6968 | 2079 | 2069 | 1652 | 2766 | 2178 | 10,981 | 4478 | 5149 | 1376 | 9181 | 1453 |
C | 177 | 105 | 397 | 643 | 758 | 359 | 686 | 57 | 364 | 232 | 207 | 471 | 242 | 1341 |
AC | 746 | 4274 | 3272 | 1429 | 2858 | 493 | 4435 | 1179 | 8327 | 2870 | 3180 | 3345 | 2238 | 2205 |
AG | 97 | 1021 | 1121 | 272 | 679 | 459 | 2236 | 457 | 3402 | 1273 | 3234 | 412 | 877 | 991 |
AT | 196 | 787 | 683 | 174 | 382 | 156 | 1020 | 203 | 1010 | 314 | 824 | 237 | 525 | 535 |
CG | 24 | 10 | 9 | 1 | 5 | 4 | 5 | 3 | 68 | 3 | 14 | 39 | 12 | – |
AAC | 145 | 332 | 435 | 86 | 172 | 182 | 365 | 171 | 850 | 437 | 150 | 136 | 252 | 206 |
AAG | 235 | 346 | 542 | 154 | 151 | 108 | 434 | 153 | 680 | 587 | 385 | 178 | 641 | 274 |
AAT | 170 | 775 | 665 | 118 | 179 | 156 | 350 | 309 | 2124 | 338 | 729 | 314 | 544 | 191 |
ACC | 152 | 142 | 249 | 126 | 186 | 114 | 377 | 69 | 199 | 296 | 236 | 145 | 185 | 262 |
ACG | 382 | 289 | 591 | 274 | 102 | 291 | 247 | 209 | 343 | 1159 | 528 | 417 | 704 | 184 |
ACT | 14 | 111 | 133 | 30 | 43 | 20 | 62 | 46 | 123 | 148 | 84 | 265 | 66 | 51 |
AGC | 322 | 172 | 239 | 203 | 102 | 255 | 202 | 113 | 199 | 519 | 614 | 55 | 474 | 124 |
AGG | 1031 | 574 | 1141 | 591 | 576 | 777 | 1245 | 220 | 853 | 1731 | 856 | 46 | 923 | 782 |
ATC | 199 | 660 | 353 | 121 | 235 | 93 | 495 | 321 | 726 | 397 | 401 | 752 | 306 | 304 |
CCG | 120 | 32 | 51 | 165 | 48 | 247 | 27 | 19 | 64 | 129 | 84 | 14 | 194 | 11 |