Table 8 The most frequent Tetra-, Penta-, and Hexanucleotide repeats in exonsa
Length of repeated unit | Taxa | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
O. latipes | D. rerio | O. niloticus | T. rubripes | E. lucius | L. oculatus | O. mykiss | C. carpio | I. punctatus | C. semilaevis | A. mexicanus | N. furzeri | P. reticulata | O. kisutch | |
4-nt | AAAT(123) | AAAT(336) | AAAC(474) | AAAC(57) | ACAG(99) | AAAC(44) | ACAG(286) | AAAT(181) | AAAT(1063) | AAAC(245) | AAAT(264) | AAAT(212) | AAAT(231) | ACAG(117) |
AAAC(91) | AAAC(229) | AAAT(339) | AAAT(57) | ACGC(68) | AGGG(32) | AAAT(119) | AAAC(121) | AAAC(928) | AAAT(124) | AAAC(232) | AAAC(109) | AAAC(166) | AAAT(61) | |
ATCC(65) | AATG(109) | Â | ACGC(42) | AAAT(53) | AAAT(17) | ATAC(106) | Â | Â | AAAG(76) | AAAG(104) | ACGC(109) | AAAG(89) | ATAC(61) | |
AAAG(39) | Â | Â | ACAG(39) | ATCG(41) | AGCG(16) | AGGG(97) | Â | Â | ACAG(66) | ACAG(95) | Â | Â | ATCG(53) | |
| Â | Â | Â | AAAG(32) | ATAC(39) | ACGG(14) | ATCG(79) | Â | Â | Â | Â | Â | Â | ACTG(41) | |
| Â | Â | Â | Â | Â | AAAG(13) | ACGC(76) | Â | Â | Â | Â | Â | Â | Â | |
5-nt | AAAAT(18) | AATAT(19) | AAAAC(79) | AAAAT(6) | ACTGC(2) | AAAAC(13) | AAATC(26) | AAAAC(13) | AAAAC(145) | AAAAC(30) | AAAAT(35) | AAAAT(26) | AAAAC(53) | AAATC(17) |
AATAG(8) | AAAAC(17) | AAAAT(49) | AAAAC(5) | AGCCC(2) | ACCGG(11) | AGAGG(25) | AAAAT(11) | AAAAT(67) | AGAGG(28) | AAAAC(25) | AATAG(13) | AAAAT(37) | AAAAC(6) | |
AATTC(7) | AAAAT(13) | AAAAG(43) | AGAGG(5) | AGGGG(2) | CCCGG(9) | AATAC(7) | AATAT(7) | AAAAG(44) | AAAAG(24) | AATGT(20) | AATTC(11) | ACCGG(29) | AGAGG(6) | |
AAAAG(5) | AAATT(7) | Â | AAAAG(4) | ATCTC(2) | AGGCG(8) | AAAAC(5) | AACTG(4) | AATAT(20) | ACTGG(14) | AATAT(12) | AGAGG(8) | AAAAG(16) | AAAAT(4) | |
AAACT(5) | AATCG(7) | Â | CCCGG(4) | CCCCG(2) | AGAGG(5) | ACCCC(5) | AATAG(4) | Â | AAAAT(13) | AAAAG(11) | AATGT(7) | Â | AACAG(4) | |
| Â | Â | Â | ACAGG(3) | Â | AAAAT(4) | Â | AGAGG(4) | Â | Â | AAGCT(11) | Â | Â | Â | |
| Â | Â | Â | AAATT(2) | Â | ACCCG(4) | Â | Â | Â | Â | AATCG(10) | Â | Â | Â | |
| Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | AAGAG(9) | Â | Â | Â | |
6-nt | ACTCGG(3) | ACACGC(6) | AAAAAC(6) | ATACCG(8) | ACACCG(4) | AAGAGG(5) | AGAGGG(12) | AGCCGG(4) | AAAAAT(8) | ACCCAG(36) | ACGAGG(4) | ACACGC(5) | AACCAG(24) | AGAGGG(5) |
AACCAG(2) | ACACTC(3) | AAAAAT(3) | ACCAGG(3) | ACACGC(4) | ACTCCC(5) | ACAGAG(7) | AAGAGG(2) | AAAAAC(6) | AACCAG(12) | AAAAAT(3) | AATCAG(3) | ACCTGG(6) | AAAACC(3) | |
AAGATG(2) | AAGATG(2) | AACCAG(3) | ACGAGG(3) | AACCAG(2) | AGCCGG(5) | AAGAGG(5) | ACAGGG(2) | AAAAAG(6) | ACCTGG(12) | AAGAGG(3) | AAAAAC(2) | AAGAGG(5) | AACCAC(2) | |
ATGTCC(2) | ACCTCC(2) | AAAAAG(2) | ACGGGG(3) | ACCGAG(2) | ACGAGG(4) | ACACGC(5) | ACCCCG(2) | AAGAGG(4) | ATCAGC(12) | AATCGT(2) | AACCAG(2) | ACCTCC(4) | AACCCT(2) | |
etc.b | AGCCCG(2) | AAGAGG(2) | ACTCGG(3) | ACCTCC(2) | AGAGGG(4) | ACTCCC(4) | ACGCAG(2) | ATATAC(4) | ACCTCC(9) | ACACTC(2) | AAGAGG(2) | ATCTGG(4) | AAGAGG(2) | |
| Â | etc.b | ACCCGG(2) | AGCCGG(3) | AGGCGG(2) | ACCCGG(3) | AGGGGG(3) | ATCCTC(2) | ACACCC(3) | AAGAGG(8) | ACCAGG(2) | AGCTCC(2) | ACGCCG(3) | AGCTCC(2) | |
| Â | Â | ACTCCG(2) | ATCCTC(3) | Â | ACCGGG(3) | AAAAAT(2) | Â | ACCCCC(3) | AGCAGG(8) | ACCTCC(2) | Â | ACTCCG(3) | Â | |
| Â | Â | AGCTCC(2) | AACACC(2) | Â | ACGGGG(3) | AAAGAG(2) | Â | ACGAGG(3) | ACAGAG(7) | ACTCTC(2) | Â | AGCGGC(3) | Â | |
| Â | Â | ATGCCC(2) | AAGGAG(2) | Â | AGTCGG(3) | AACACC(2) | Â | AGGGGG(3) | ACCACG(5) | AGTCCG(2) | Â | AATACT(2) | Â | |
| Â | Â | Â | AATCCC(2) | Â | ATGCCC(3) | AACCCT(2) | Â | ATACAC(3) | ACGAGG(5) | Â | Â | Â | Â | |
| Â | Â | Â | AATCTG(2) | Â | AACAGC(2) | ACCCAG(2) | Â | ATCCTC(3) | ACTGGG(5) | Â | Â | Â | Â | |
| Â | Â | Â | ACAGAG(2) | Â | ACACTC(2) | ACCGCC(2) | Â | Â | ATCCTC(5) | Â | Â | Â | Â | |
| Â | Â | Â | Â | Â | ACCCCC(2) | Â | Â | Â | AAAAAC(5) | Â | Â | Â | Â | |
| Â | Â | Â | Â | Â | ACCGGC(2) | Â | Â | Â | Â | Â | Â | Â | Â | |
| Â | Â | Â | Â | Â | AGCCCC(2) | Â | Â | Â | Â | Â | Â | Â | Â | |