Table 4 Summary of clean reads mapped from FRCC, M4nRR, F3nRR and M3nRR to the reference genome
From: Formation of autotriploid Carassius auratus and its fertility-related genes analysis
Sample name | Total reads | Total mapped | Multiple mapped | Uniquely mapped |
|---|---|---|---|---|
FRCC-1 | 42,252,766 | 38,590,536 (91.33 %) | 2,470,549 (5.85 %) | 36,119,987 (85.48 %) |
FRCC-2 | 39,624,312 | 36,222,309 (91.41 %) | 2,283,305 (5.76 %) | 33,939,004 (85.65 %) |
FRCC-3 | 46,395,874 | 42,474,296 (91.55 %) | 2,608,537 (5.62 %) | 39,865,759 (85.93 %) |
M4nRR-1 | 42,506,792 | 25,481,741 (59.95 %) | 791,414 (1.86 %) | 24,690,327 (58.09 %) |
M4nRR-2 | 42,709,522 | 26,274,265 (61.52 %) | 1,570,067 (3.68 %) | 24,704,198 (57.84 %) |
M4nRR-3 | 40,538,356 | 24,237,536 (59.79 %) | 749,604 (1.85 %) | 23,487,932 (57.94 %) |
F3nRR-1 | 40,848,106 | 28,790,170 (70.48 %) | 1,218,302 (2.98 %) | 27,571,868 (67.50 %) |
F3nRR-2 | 50,588,484 | 35,839,842 (70.85 %) | 1,526,075 (3.02 %) | 34,313,767 (67.83 %) |
F3nRR-3 | 48,796,080 | 34,635,763 (70.98 %) | 1,489,678 (3.05 %) | 33,146,085 (67.93 %) |
M3nRR-1 | 44,995,054 | 31,933,903 (70.97 %) | 1,010,710 (2.25 %) | 30,923,193 (68.72 %) |
M3nRR-2 | 44,659,854 | 31,782,067 (71.16 %) | 982,486 (2.20 %) | 30,799,581 (68.96 %) |
M3nRR-3 | 44,976,210 | 31,860,677 (70.84 %) | 1,043,971 (2.32 %) | 30,816,706 (68.52 %) |