Table 1 Genome-wide SNPs around significant peaks associated with egg number traits
SNP ID | Chromosome | Posistiona | P value | Nearest gene |
|---|---|---|---|---|
AX-75424481 | 1 | 30418287 | 2.69E-07 | NELL2 |
AX-75424489 | 1 | 30420285 | 7.69E-06 | NELL2 |
AX-75427140 | 1 | 31722672 | 1.80E-06 | LRIG3 |
AX-75448176 | 1 | 41739240 | 3.62E-09 | TSPAN19 |
AX-75450814 | 1 | 43099910 | 4.52E-07 | KITLG |
AX-75499001 | 1 | 65863432 | 2.52E-06 | ENSGALG00000046127 |
AX-75225234 | 1 | 1.18E+08 | 5.79E-07 | ENSGALG00000036169 |
AX-75320912 | 1 | 1.63E+08 | 2.17E-06 | PCDH17 |
AX-75322789 | 1 | 1.64E+08 | 2.13E-06 | ENSGALG00000034638 |
AX-75322810 | 1 | 1.64E+08 | 1.38E-06 | ENSGALG00000034638 |
AX-75965321 | 2 | 1068425 | 2.52E-08 | MINDY4, AQP1 |
AX-75993000 | 2 | 1215757 | 6.42E-06 | GHRHR |
AX-75996755 | 2 | 1234625 | 3.13E-07 | GHRHR |
AX-76053674 | 2 | 20576504 | 2.35E-06 | FAM171A1 |
AX-80779498 | 2 | 46145450 | 1.88E-06 | TRANK1 |
AX-76003273 | 2 | 1.3E+08 | 5.33E-08 | AZIN1 |
AX-76003319 | 2 | 1.3E+08 | 1.55E-06 | AZIN1 |
AX-76536054 | 3 | 69621540 | 2.42E-07 | NA |
AX-76536071 | 3 | 69628923 | 1.59E-06 | NA |
AX-76536096 | 3 | 69655624 | 4.14E-06 | NA |
AX-76536308 | 3 | 69762163 | 5.02E-06 | NA |
AX-76540844 | 3 | 72000979 | 5.65E-07 | POU3F2, FBXL4 |
AX-76541349 | 3 | 72227940 | 9.78E-07 | ENSGALG00000034564 |
AX-76541394 | 3 | 72243677 | 7.32E-06 | ENSGALG00000034564 |
AX-76541486 | 3 | 72303465 | 2.23E-06 | ENSGALG00000034564 |
AX-76541488 | 3 | 72304623 | 1.32E-06 | ENSGALG00000034564 |
AX-76401421 | 3 | 1.06E+08 | 2.40E-06 | NCOA1 |
AX-76624455 | 4 | 141350 | 1.78E-06 | MSN |
AX-76630762 | 4 | 173004 | 4.71E-07 | MSN |
AX-76645558 | 4 | 249014 | 3.49E-06 | ENSGALG00000044799 |
AX-76652327 | 4 | 283517 | 1.22E-06 | HEPH, HSF3 |
AX-76658977 | 4 | 319076 | 1.94E-06 | HEPH, GPR83L |
AX-76662643 | 4 | 338418 | 1.02E-06 | GPR83L, ENSGALG00000038728 |
AX-80823531 | 4 | 394383 | 1.51E-06 | NA |
AX-76676155 | 4 | 408469 | 4.71E-07 | NA |
AX-76714260 | 4 | 612204 | 3.23E-06 | ENSGALG00000029764 |
AX-76718681 | 4 | 634832 | 2.09E-06 | ENSGALG00000029764 |
AX-76675026 | 4 | 48646624 | 1.82E-06 | ADGRL3 |
AX-76713110 | 4 | 67434214 | 4.37E-06 | ENSGALG00000041624, GABRA2, GABRA4 |
AX-76715084 | 4 | 68430908 | 4.09E-06 | GRXCR1 |
AX-76776179 | 5 | 1133440 | 1.52E-07 | LUZP2 |
AX-76814849 | 5 | 30327067 | 3.26E-06 | RYR3 |
AX-76845554 | 5 | 44381627 | 3.63E-06 | CCDC88C, PPP4R3A |
AX-76855266 | 5 | 48607009 | 3.72E-06 | YY1, SLC25A29 |
AX-76855305 | 5 | 48622650 | 1.28E-06 | SLC25A29, YY1 |
AX-76855335 | 5 | 48635048 | 1.45E-06 | SLC25A29 |
AX-76855457 | 5 | 48687658 | 3.62E-07 | WDR25 |
AX-76855519 | 5 | 48714129 | 6.08E-06 | WDR25 |
AX-76855557 | 5 | 48731601 | 9.56E-12 | WDR25 |
AX-76855561 | 5 | 48733361 | 3.33E-08 | WDR25 |
AX-76855583 | 5 | 48739609 | 5.29E-12 | BEGAIN |
AX-76855593 | 5 | 48745253 | 5.31E-18 | BEGAIN |
AX-76855630 | 5 | 48762022 | 6.51E-08 | BEGAIN |
AX-76855665 | 5 | 48778313 | 4.22E-07 | BEGAIN |
AX-76855684 | 5 | 48786534 | 9.28E-18 | BEGAIN |
AX-76855699 | 5 | 48792877 | 1.40E-18 | BEGAIN |
AX-76855705 | 5 | 48795578 | 1.94E-12 | BEGAIN |
AX-76855726 | 5 | 48804374 | 2.31E-06 | BEGAIN |
AX-80949259 | 5 | 48808664 | 1.61E-06 | BEGAIN |
AX-76855747 | 5 | 48811664 | 9.02E-10 | BEGAIN |
AX-76855766 | 5 | 48820492 | 5.54E-13 | BEGAIN |
AX-76855815 | 5 | 48838402 | 2.48E-12 | BEGAIN |
AX-76855817 | 5 | 48839325 | 5.76E-12 | BEGAIN |
AX-76900556 | 6 | 13775431 | 4.09E-06 | KCNMA1 |
AX-76900629 | 6 | 13799359 | 6.36E-06 | KCNMA1 |
AX-76943077 | 6 | 30466599 | 5.62E-06 | NA |
AX-77011457 | 7 | 25213170 | 5.44E-06 | NA |
AX-77014656 | 7 | 26516128 | 6.78E-06 | SLC15A2, IQCB1 |
AX-75660603 | 11 | 445721 | 3.26E-07 | CSNK2A2 |
AX-75665353 | 11 | 607645 | 1.34E-07 | POLR2C |
AX-75643828 | 11 | 1608025 | 2.68E-06 | HYDIN |
AX-75644090 | 11 | 1618412 | 7.76E-06 | HYDIN |
AX-80948010 | 11 | 1754582 | 4.07E-06 | VAC14 |
AX-75703508 | 12 | 18557458 | 5.27E-07 | ITPR1 |
AX-75703529 | 12 | 18564932 | 2.08E-07 | ITPR1 |
AX-75703541 | 12 | 18569966 | 2.87E-07 | ITPR1 |
AX-75703548 | 12 | 18572141 | 6.83E-07 | ITPR1 |
AX-75744414 | 13 | 16244175 | 5.66E-07 | VDAC1 |
AX-75745363 | 13 | 16603463 | 8.21E-07 | ENSGALG00000029896 |
AX-75810149 | 14 | 8804646 | 1.25E-06 | OTOA |
AX-75810223 | 14 | 8826708 | 8.41E-07 | OTOA |
AX-75906835 | 18 | 6994110 | 2.21E-06 | SMURF2 |
AX-80787269 | 18 | 7876592 | 1.18E-06 | ARSG, SLC16A6 |
AX-76227922 | 20 | 8585474 | 4.52E-06 | ENSGALG00000039201, ENSGALG00000005652 |
AX-76249257 | 21 | 4983824 | 3.25E-07 | KAZN |
AX-76249303 | 21 | 4996326 | 6.51E-08 | KAZN |
AX-76250675 | 21 | 5263523 | 1.55E-09 | C1orf158, ENSGALG00000021598 |
AX-76288938 | 23 | 4139841 | 1.78E-07 | NA |
AX-80768216 | 23 | 4214468 | 7.13E-08 | AGO1 |
AX-76339015 | 26 | 3035521 | 3.58E-07 | NA |
AX-76348623 | 26 | 5077655 | 3.82E-09 | TAF8 |
AX-76348772 | 26 | 5100952 | 1.49E-08 | CHIA |
AX-76379082 | 28 | 2980442 | 4.15E-06 | SBNO2 |
AX-76379816 | 28 | 3170288 | 3.73E-06 | NA |
AX-76379939 | 28 | 3197429 | 1.98E-06 | GAMT, DAZAP1 |
AX-76380005 | 28 | 3210016 | 6.59E-07 | DAZAP1 |
AX-76380342 | 28 | 3284684 | 1.57E-08 | SLC39A3 |
AX-76380390 | 28 | 3295475 | 1.40E-10 | SLC39A3, DIRAS |
AX-77265370 | 63 | 8262232 | 1.19E-06 | CNTFR |
AX-77206121 | 63 | 24853011 | 5.82E-06 | NA |
AX-77226182 | 63 | 46670667 | 1.48E-08 | CAMK4 |
AX-77226564 | 63 | 46942411 | 2.19E-06 | NA |
AX-77228575 | 63 | 49223728 | 1.22E-06 | NA |
AX-77252226 | 63 | 66675375 | 4.08E-07 | MUSK |
AX-77252227 | 63 | 66676347 | 1.56E-07 | MUSK |
AX-77252241 | 63 | 66683942 | 1.89E-06 | MUSK |
AX-77252265 | 63 | 66694071 | 8.69E-09 | MUSK |
AX-80869954 | 63 | 66732038 | 1.01E-08 | MUSK |