Fig. 1
Differential gene expression of SC0368 and SC0595 Salmonella ser. Choleraesuis mutants. A Correlation of RT-qPCR and RNA-Seq results for 18 differentially expressed genes between the △0368△0595, △0595, △0368 mutants and the parental wild-type strain ATCC 10708 (R2 = 0.89, p < 0.001). Distributions of down-regulated genes (B) and up-regulated genes (C) with at least a 2-fold change in the mutants relative to the wild-type strain. D Down-regulated KEGG pathways. E Up-regulated KEGG pathways. Blue, mutant △0368; Yellow, mutant △0595 and Green, mutant △0368△0595. F Repression of DEGs encoding for LPS core synthesis (marked with red arrow in D) in strain △0368△0595