Candidate gene screening for lipid deposition using combined transcriptomic and proteomic data from Nanyang black pigs

Table 3 Statistics for the candidate genes identified from the transcriptome and proteome

Gene name	log2FC of mRNA	q-value	FC of protein	P-value	Annotated pathways
*BDH2*	−1.2750	0.0000	0.6771	0.0425	Synthesis and degradation of ketone bodies, butanoate metabolism, Metabolic pathways
*FASN*	3.5126	0.0089	1.3604	0.0213	Fatty acid biosynthesis, Metabolic pathways, Insulin signaling pathway
*SLC25A20*	−1.4577	0.0011	0.7753	0.0326	Fatty acid oxidation, Metabolism of lipids and lipoproteins, Thermogenesis, Fatty acid, triacylglycerol, and ketone body metabolism, Metabolic pathways,
*EIF3E*	−1.2736	0.0007	1.2355	0.0263	RNA transport, Hepatitis C, mTOR Pathway
*CAT*	−1.2643	0.0003	1.5619	0.0351	FoxO signaling pathway, glyoxylate and dicarboxylate metabolism, Metabolic pathways, Carbon metabolism, Longevity regulating pathway, Amyotrophic lateral sclerosis (ALS)
*PRX*	1.4445	0.0042	1.3672	0.0068	Regulation of RNA splicing
*FLNA*	1.6611	0.0007	1.2641	0.0129	MAPK signaling pathway, Focal adhesion, Salmonella infection, Proteoglycans in cancer, Cytoskeletal Signaling
*TFRC*	1.9311	0.0116	1.9358	0.0218	HIF-1 signaling pathway, Endocytosis, Phagosome, Hematopoietic cell lineage
*MPZ*	3.0469	0.0084	22.725	0.0280	Cell adhesion molecules (CAMs), Neural crest differentiation

log2FC of mRNA: log2FC value between HF and LF group in transcriptome; q-value: adjusted P value in transcriptome; FC of protein: fold-change value between HF and LF group in proteomic

ISSN: 1471-2164