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Table 1 The general information and sequence characterization of 53 CaAAAP genes

From: Identification, systematic evolution and expression analyses of the AAAP gene family in Capsicum annuum

S.N. Genea Locusb Locationc ORF(bp)d Exone Proteinf TM regiong
Size (aa) MW(d) pI
  AAP group         
1 CaAAP1 Capana07g002429 Chr07:220179435–220,181,692 1335 7 444 49,460.8 8.72 11
2 CaAAP2 Capana07g002430 Chr07:220188828–220,192,330 1869 10 622 68,584.1 8.46 14
3 CaAAP3 Capana07g002431 Chr07:220195003–220,198,004 1410 7 469 51,763.2 8.45 10
4 CaAAP4 Capana07g002432 Chr07:220225817:220233681 2532 13 843 93,224.4 8.88 17
5 CaAAP5 Capana04g000780 Chr04:14469803:14475148 1446 7 481 52,757.7 8.81 10
6 CaAAP6 Capana12g000826 Chr12:27187513:27194231 1467 7 488 53,825.3 8.94 9
7 CaAAP7 Capana08g002210 Chr08:143014796:143019992 1419 7 472 51,747.8 9.12 11
8 CaAAP8 Capana04g001588 Chr04:67204663:67207202 1434 6 477 52,413.8 8.27 10
9 CaAAP9 Capana06g001752 Chr06:50038242:50040303 1419 6 472 51,681.9 7.84 10
10 CaAAP10 Capana05g001770 Chr05:174328892:174330262 1020 3 339 37,207.9 6.86 7
  LHT group         
11 CaLHT1 Capana02g003614 Chr02:162887482:162890584 1350 8 449 50,428 8.6 9
12 CaLHT2 Capana02g003615 Chr02:162905774:162912940 1266 7 421 47,443 8.24 9
13 CaLHT3 Capana02g003616 Chr02:162914284:162921151 1332 8 443 49,858.6 9.08 11
14 CaLHT4 Capana04g002888 Chr04:215599914:215604069 1227 9 408 46,113.8 8.27 7
15 CaLHT5 Capana04g001881 Chr04:130533897:130536648 1329 6 442 49,917.6 8.06 10
16 CaLHT6 Capana11g000230 Chr11:5761051:5762379 1329 1 442 49,944.5 9.1 10
17 CaLHT7 Capana03g001379 Chr03:25005836:25008812 1329 7 442 49,012.6 9.4 11
18 CaLHT8 Capana05g000336 Chr05:7406911:7414486 1065 7 354 39,858.5 9.42 7
19 CaLHT9 Capana11g002248 Chr11:216341951:216346445 1311 8 436 48,573.9 9.03 8
20 CaLHT10 Capana04g000478 Chr04:7738487:7744000 1581 5 526 57,977.4 9.61 9
21 CaLHT11 Capana04g000098 Chr04:1109665:1112218 1338 5 445 49,110.6 8.68 10
22 CaLHT12 Capana08g002793 Chr08:152269921:152272976 1713 5 570 61,963 9.55 9
23 CaLHT13 Capana11g000398 Chr11:11019799:11021033 708   235 25,865.9 9.01 2
24 CaLHT14 Capana04g000106 Chr04:1178475:1183677 669   222 24,427.3 8.47 3
  GAT group         
25 CaGAT1 Capana00g003418 Chr00:545297054:545303475 1365 7 454 49,950.5 8.68 10
26 CaGAT2 Capana11g000210 Chr11:5435275:5440152 1092 6 363 39,923.8 9.98 9
  ProT group         
27 CaProT1 Capana05g001989 Chr05:191409867:191415970 1320 7 439 47,836.8 9.73 12
28 CaProT2 Capana05g001990 Chr05:191424542:191430181 1347 7 448 49,162.1 9.4 11
29 CaProT3 Capana03g002827 Chr03:118029421:118036334 1344 7 447 49,190.2 9.61 12
  AUX group         
30 CaAUX1 Capana09g001555 Chr09:181029189:181033262 1467 7 488 54,841.3 8.15 10
31 CaAUX2 Capana10g001370 Chr10:147549183:147556929 1467 7 488 54,912.8 8.56 10
32 CaAUX3 Capana04g001744 Chr04:99262090:99266939 1317 8 438 49,663.3 8.25 9
33 CaAUX4 Capana08g002704 Chr08:150979738:150984984 1482 8 493 55,541.5 8.75 10
  ANT group         
34 CaANT1 Capana02g002432 Chr02:144978448:144979728 1281 1 426 46,665.9 7.92 11
35 CaANT2 Capana02g002433 Chr02:144981268:144982602 1335 1 444 48,548.7 4.74 11
36 CaANT3 Capana02g002434 Chr02:144983909:144985192 1284 1 427 46,457.5 4.82 11
37 CaANT4 Capana04g002414 Chr04:201839016:201840293 1278 1 425 46,811.9 7.45 11
38 CaANT5 Capana03g004210 Chr03:248829547:248830964 930 2 309 33,786.3 10.06 10
  ATLa group         
39 CaATL1 Capana06g001998 Chr06:75940086:75942122 846 3 281 30,550.9 4.94 3
40 CaATL2 Capana03g000522 Chr03:7178172:7179590 1419 1 472 51,153.5 5.43 10
41 CaATL3 Capana05g002081 Chr05:197860240:197862960 1302 6 433 47,459.1 8.35 11
42 CaATL4 Capana00g004937 Chr00:676629079:676631743 1320 5 439 47,898.6 8.55 11
43 CaATL5 Capana04g000715 Chr04:12477359:12484737 1344 5 447 48,657.5 8.36 11
44 CaATL6 Capana02g000804 Chr02:93929776:93933801 1407 5 468 50,795.2 8.78 11
45 CaATL7 Capana02g003206 Chr02:157224580:157228911 1383 5 460 49,954.5 8.55 11
  ATLb group         
46 CaVAAT1 Capana00g004212 Chr00:618994856:618996151 1296 1 431 46,618.7 7.96 8
47 CaVAAT2 Capana04g001726 Chr04:93008498:93010474 1281 3 426 46,958.9 7.71 10
48 CaVAAT3 Capana12g002556 Chr12:222093246:222094767 1017 2 338 36,992 7.91 9
49 CaVAAT4 Capana05g002349 Chr05:207916251:207920239 1140 3 379 41,865.5 9.04 9
50 CaVAAT5 Capana03g003057 Chr03:162840327:162847744 1395 9 464 51,484.7 4.27 7
51 CaVAAT6 Capana10g001696 Chr10:173666186:173669984 1608 11 535 57,908.7 5.19 10
52 CaVAAT7 Capana03g002859 Chr03:127734852:127743213 1338 7 445 48,690.8 4.98 5
53 CaVAAT8 Capana12g002523 Chr12:220748120:220761121 1989 15 662 73,214.4 5.85 8
  1. S.N serial number, ORF open reading frame, bp base pair, aa amino acids, MW molecular weight, pI isoelectric point, TM transmembrane, NA not available
  2. aSystematic designation given to pepper AAAPs in this study
  3. bLocus identity number of AAAP assigned by Pepper Genome Database2 (http://peppersequence.genomics.cn/page/)
  4. cChromosomal localization of pepper AAAP genes
  5. dLength of the open reading frame
  6. eNumber of extrons obtained from GSDS by comparing sequences between transcript and genome (Gene Structure Display Server; http://gsds.cbi.pku.edu.cn/)
  7. fProtein characterization of CaAAAPs obtained from EXPASY server (http://web.expasy.org/protparam/)
  8. gNumber of transmembrane segments possessed by CaAAAPs, predicted by the TMHMM Server v2.0