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Fig. 1 | BMC Genomics

Fig. 1

From: Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation

Fig. 1

Heatmap representing the degree of similarity of the MOB genomes. a Pseudomonas sp. OF001, and b Rubrivivax sp. A210. Heatmaps were derived from the average nucleotide identity (ANI) matrix based on BLAST (ANIb). Dendrogram directly reflects the degree of identity between genomes. ANIm: ANI based on MUMmer; TETRA: correlation indexes of the tetra-nucleotide frequencies; DDH d4: DDH calculated with the formula d4, which is the non-logarithmic version of formula d5 (used for the Fig. S1 and S2). Formula d4 is highly recommended when using draft genomes to assure confident results [37]

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BMC Genomics

ISSN: 1471-2164

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