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Table 2 Characteristics of the SD networks of different species

From: Modelling segmental duplications in the human genome

  Human Gorilla Gibbon Mouse Rat Dog Chicken Zebrafish Worm
GS (109 bps) 2.88 2.78 2.65 2.46 2.62 2.2 0.96 1.35 0.083
Num. of nodes 12,579 30,935 29,376 14,766 35,919 18,438 3,169 34,445 1,572
Num. of edges 37,319 42,643 443,916 166,145 183,618 62,308 17,102 601,289 2,199
Intra- (%) 19 46 7 8 24 7 36 9 37
Tandem (%) 6 25 2 2 10 3 8 1 17
f value 0.48 0.43 0.57 0.42 0.42 0.33 0.29 0.35 0.32
  1. These include: genome size (GS) excluding sex chromosomes, number of nodes, number of edges, fraction of intrachromosomal edges and tandem edges among all edges of a network and regression-based predicted f values. An edge is denoted as tandem if both duplicated regions linked with the edge are located at the same chromosome at the distance <5105 bps