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Fig. 1 | BMC Genomics

Fig. 1

From: Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets

Fig. 1

Sequoia’s workflow showing: A Nanopore based single molecule sequencing, B Extracting signals corresponding to successive 5-mers from input Fast5 file, C Constructing a similarity matrix by computing a similarity score for every pair of signal instances using the dynamic time warping algorithm, subset showing DTW based distance between signals being compared, D Displaying homogeneity of signal instances within each 5-mer through box and violin plots based on the summary statistics of the similarity matrix (E) Illustrating variabilities among signal instances across multiple 5-mers via t-SNE plot

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BMC Genomics

ISSN: 1471-2164

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