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Fig. 3 | BMC Genomics

Fig. 3

From: Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets

Fig. 3

Case study 1: Comparison of the signal instances from modified Cytosine locations (m5C) versus regular Cytosine. A Left panel: t-SNE plot of signal clusters for ‘GACCT’ with no dynamic time warping penalty applied. Right panel: Raw signal plot corresponding to the highlighted points in the left panel. B Comparing signal length distributions for the regular Cytosine and m5C signals for the 5-mer: GACCT. C t-SNE plot for GACCT after applying dynamic time warping with penalty. The contrast across Fig. 3A & 3B highlight the role of dynamic time warping in segregating and exploring nanopore based signal information

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BMC Genomics

ISSN: 1471-2164

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