Fig. 4

Case study 2: comparing signal patterns based on varying parameters, for modified A (m6A) and a regular Adenosine. A Comparing t-SNE plots for ACAGG with perplexity = 30 on the left and perplexity = 7 on the right. Clustering significantly reorders and assembly improves depending on the perplexity and data. B On the right panel, the average signal corresponding to the 5-mer ‘ACAGT’ pertaining to the selected points in the t-SNE plot on the left panel. The black line is the average signal of the regular Adenosine reads while the orange is an average signal of the m6A