Photosynthesis-related genes
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Rubisco
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rbcL
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Photosystem I
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psaA, psaB, psaC, psaI, psaJ
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Assembly and stability of Photosystem I
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ycf3**, ycf4
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Photosystem II
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psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ,
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ATP synthase
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atpA, atpB, atpE, atpF*, atpH, atpI
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Cytochrome b/f complex
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petA, petB*, petD, petG, petL, petN
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Cytochrome c synthesis
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ccsA
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NADPH dehydrogenase
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ndhA*, ndhB*(2), ndhC, ndhD, ndhE, ndhF, ndhG ndhH, ndhI, ndhJ, ndhK
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Transcription- and translation-related genes
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Transcription
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rpoA, rpoB, rpoC1*, rpoC2
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Ribosomal proteins
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rpl2*(2), rpl14, rpl16, rpl20, rpl22, rpl23(2), rpl33, rpl36, rps2, rps3, rps4, rps7(2), rps8, rps11, rps12*(2), rps14, rps15, rps16*, rps18, rps19(2)
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RNA genes
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Ribosomal RNA
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rrn4.5, rrn5, rrn16, rrn23
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Transfer RNA
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trnA-UGC(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC*, trnG-UCC, trnH-GUG, trnI-CAU*(2), trnI-GAU(2), trnK-UUU*, trnL-CAA(2), trnL-UAG, trnL-UAA*, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC*, trnW-CCA, trnY-GUA
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Other genes
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RNA processing
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matK
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Carbon metabolism
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cemA
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Fatty acid synthesis
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accD
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Proteolysis
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clpP**
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Genes of unknown function
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Conserved reading frames
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ycf1, ycf2(2), ycf15(2)
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