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Table 1 Summary of the examined teleost species and their genomes

From: Temporal dynamics of teleost populations during the Pleistocene: a report from publicly available genome data

Common name

Scientific name

Assembly version

Genome size (bp)

Gene number

Zebrafish

Danio rerio

GRCz11

1,373,471,384

25,709

Mexican tetra

Astyanax mexicanus

GCA_000372685.1

1,191,242,572

23,041

Atlantic herring

Clupea harengus

GCA_000966335.1

807,711,962

23,095

Japanese flounder

Paralichthys olivaceus

GCA_001904815.2

545,775,252

21,787

Tongue sole

Cynoglossus semilaevis

GCA_000523025.1

470,199,494

21,381

Three-spined stickleback

Gasterosteus aculeatus

BROAD S1

461,533,448

20,772

Channel catfish (BGI)a

Ictalurus punctatus

PRJNA319455

845,391,728

21,937

Large yellow croaker

Larimichthys crocea

GCA_000972845.1

678,938,134

24,418

Asian seabass

Lates calcarifer

GCA_001640805.1

668,481,366

24,348

Nile tilapia

Oreochromis niloticus

GCA_000188235.1

927,383,394

21,437

Asia arowanab

Scleropages formosus

GCA_001624265.1(Golden)

777,359,276

22,016

  

GCA_001624245.1(Green)

746,544,453

21,524

  

GCA_001624255.1 (Red)

738,407,480

21,256

Spotted green pufferfish

Tetraodon nigroviridis

TETRAODON 8.0

358,618,246

19,583

Fugu

Takifugu rubripes

FUGU5

358,618,246

18,505

Grass carpc

Ctenopharyngodon idella

–

1,076,149,922

32,785

Atlantic salmon

Salmo salar

GCA_000233375.4

2,966,890,203

43,899

Atlantic cod

Gadus morhua

gadMor1

832,114,588

20,083

Medaka

Oryzias latipes

ASM223467v1

734,057,086

19,669

Amazon molly

Poecilia formosa

GCA_000485575.1

748,923,461

23,613

Southern platyfish

Xiphophorus maculatus

GCA_000241075.1

729,662,853

20,367

Spotted gar

Lepisosteus oculatus

GCA_000242695.1

945,878,036

18,328

Coelacanth

Latimeria chalumnae

GCA_000225785.1

2,860,591,921

19,555

Tropical clawed frogd

Xenopus tropicalis

GCA_000004195.1

1,511,735,326

18,442

  1. aThe high-quality genome assembly of the Chinese channel catfish population is available in GigaScience Database at http://dx/doi.org/10.5524/100212.
  2. bThe genome information of golden arowana was used for the divergence time evaluation.
  3. cThe genome assembly of grass carp was downloaded from the Grass Carp Genome project at http://www.ncgr.ac.cn/grasscarp/.
  4. dThe outgroup for construction of the divergence time tree (see Figure S1).
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BMC Genomics

ISSN: 1471-2164

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