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Table 2 Details of genes / COGs associated with biofilm phenoptype on stainless-steel identified by Pyseer

From: Biofilm associated genotypes of multiple antibiotic resistant Pseudomonas aeruginosa

ST111
Cog / Gene Function   Presence lrt-pvalue Beta
group_257 Type IV secretion system apparatus / Translocase WH-SGI-V-07174_06314 16 0.005 -0.773
cusS_2 Sensor kinase CusS WH-SGI-V-07168_02759 22 0.008 1.050
group_2942 HD-GYP domain-containing protein WH-SGI-V-07174_02964 2 0.008 -1.820
group_2943 Hypothetical WH-SGI-V-07174_02965 2 0.008 -1.820
group_2944 Hypothetical WH-SGI-V-07174_02966 2 0.008 -1.820
group_2945 Transposase WH-SGI-V-07174_02967 2 0.008 -1.820
group_2946 XRE family transcriptional regulator WH-SGI-V-07174_02968 2 0.008 -1.820
group_2947 type II toxin-antitoxin system RelE/ParE family toxin WH-SGI-V-07174_02969 2 0.008 -1.820
hin_4 DNA-invertase WH-SGI-V-07174_02970 2 0.008 -1.820
group_2949 Tn3 family transposase WH-SGI-V-07174_02971 2 0.008 -1.820
ST235
Cog / Gene Function   Presence lrt-pvalue Beta
group_2587 Type IV secretion system apparatus / Translocase WH-SGI-V-07406_05831 5 0.000 1.640
group_2588 Hypothetical WH-SGI-V-07406_05832 5 0.000 1.640
group_2593 HK97 gp10 family phage protein WH-SGI-V-07406_05844 5 0.000 1.640
group_977 Methyltransferase domain protein WH-SGI-V-07406_05845 5 0.000 1.640
group_129 Glycoside hydrolase family 19 protein WH-SGI-V-07425_03679 4 0.001 1.920
group_2655 Hypothetical WH-SGI-V-07425_03618 4 0.001 1.920
merP_2 Mercuric transport protein periplasmic component WH-SGI-V-07176_04878 6 0.001 -2.240
group_953 Mercury resistance co-regulator MerD WH-SGI-V-07176_04876 6 0.001 -2.240
group_596 Phage gp6-like head-tail connector protein WH-SGI-V-07406_05848 12 0.001 1.560
dcm DNA-cytosine methyltransferase WH-SGI-V-07170_03311 19 0.002 2.600
algA_3 Alginate biosynthesis protein AlgA WH-SGI-V-07170_03301 19 0.002 2.600
group_199 SAM-dependent methyltransferase, partial WH-SGI-V-07176_05804 4 0.003 2.420
group_2651 Hypothetical WH-SGI-V-07425_03614 2 0.005 1.510
group_2634 Hypothetical WH-SGI-V-07425_01793 4 0.006 1.850
group_2635 Hypothetical WH-SGI-V-07425_01794 4 0.006 1.850
group_2636 DUF3577 domain-containing protein WH-SGI-V-07425_01796 4 0.006 1.850
group_2638 Hypothetical WH-SGI-V-07425_01801 4 0.006 1.850
group_2639 TIGR03761 family integrating conjugative element protein WH-SGI-V-07425_01809 4 0.006 1.850
frmR Transcriptional repressor FrmR WH-SGI-V-07425_04778 4 0.006 1.850
group_2677 Hypothetical WH-SGI-V-07425_04812 4 0.006 1.850
group_994 Hypothetical WH-SGI-V-07425_01799 4 0.006 1.850
group_1012 Uridylate kinase WH-SGI-V-07496_01971 3 0.007 -3.470
group_1013 DUF3275 family protein WH-SGI-V-07496_01976 3 0.007 -3.470
group_1014 SAM-dependent methyltransferase WH-SGI-V-07496_01979 3 0.007 -3.470
group_1015 Hypothetical WH-SGI-V-07496_01983 3 0.007 -3.470
group_1016 TIGR03759 family integrating conjugative element protein WH-SGI-V-07496_01984 3 0.007 -3.470
group_1017 Type IV conjugative transfer system coupling protein TraD WH-SGI-V-07496_01987 3 0.007 -3.470
group_1018 TIGR03747 family integrating conjugative element membrane protein WH-SGI-V-07496_01988 3 0.007 -3.470
group_1019 Restriction endonuclease WH-SGI-V-07496_01991 3 0.007 -3.470
group_1020 GIY-YIG nuclease family protein WH-SGI-V-07496_01992 3 0.007 -3.470
group_1021 TIGR03745 family integrating conjugative element membrane protein WH-SGI-V-07496_01998 3 0.007 -3.470
group_1022 TIGR03746 family integrating conjugative element protein WH-SGI-V-07496_02000 3 0.007 -3.470
group_1023 TIGR03752 family integrating conjugative element protein WH-SGI-V-07496_02002 3 0.007 -3.470
group_1024 Conjugative transfer ATPase WH-SGI-V-07496_02004 3 0.007 -3.470
group_1025 TraI domain-containing protein WH-SGI-V-07496_02019 3 0.007 -3.470
ftsH4 ATP-dependent zinc metalloprotease FtsH 4 WH-SGI-V-07496_03490 3 0.007 -3.470
  1. Presence = number of genomes gene is present in /25 for ST111 and /23 for ST235