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Table 3 Details of genes / COGs associated with biofilm phenoptype on stainless-steel identified by Pyseer

From: Biofilm associated genotypes of multiple antibiotic resistant Pseudomonas aeruginosa

ST111
Cog / Gene Function   Presence lrt-pvalue Beta
group_257 Putative Type IV secretion system translocase WH-SGI-V-07174_06314 16 0.005 -0.773
cusS_2 Sensor kinase CusS WH-SGI-V-07168_02759 22 0.008 1.050
group_2942 HD-GYP domain-containing protein WH-SGI-V-07174_02964 2 0.008 -1.820
group_2943 Hypothetical WH-SGI-V-07174_02965 2 0.008 -1.820
group_2944 Hypothetical WH-SGI-V-07174_02966 2 0.008 -1.820
group_2945 Transposase WH-SGI-V-07174_02967 2 0.008 -1.820
group_2946 XRE family transcriptional regulator WH-SGI-V-07174_02968 2 0.008 -1.820
group_2947 type II toxin-antitoxin system RelE/ParE family toxin WH-SGI-V-07174_02969 2 0.008 -1.820
hin_4 DNA-invertase WH-SGI-V-07174_02970 2 0.008 -1.820
group_2949 Tn3 family transposase WH-SGI-V-07174_02971 2 0.008 -1.820
ST235
Cog / Gene Function   Presence lrt-pvalue Beta
group_2587 Putative Type IV secretion system translocase WH-SGI-V-07406_05831 5 0.000 1.640
group_2588 Hypothetical WH-SGI-V-07406_05832 5 0.000 1.640
group_2593 HK97 gp10 family phage protein WH-SGI-V-07406_05844 5 0.000 1.640
group_977 Methyltransferase domain protein WH-SGI-V-07406_05845 5 0.000 1.640
group_129 Glycoside hydrolase family 19 protein WH-SGI-V-07425_03679 4 0.001 1.920
group_2655 Hypothetical WH-SGI-V-07425_03618 4 0.001 1.920
merP_2 Mercuric transport protein periplasmic component WH-SGI-V-07176_04878 6 0.001 -2.240
group_953 Mercury resistance co-regulator MerD WH-SGI-V-07176_04876 6 0.001 -2.240
group_596 Phage gp6-like head-tail connector protein WH-SGI-V-07406_05848 12 0.001 1.560
dcm DNA-cytosine methyltransferase WH-SGI-V-07170_03311 19 0.002 2.600
algA_3 Alginate biosynthesis protein AlgA WH-SGI-V-07170_03301 19 0.002 2.600
group_199 SAM-dependent methyltransferase, partial WH-SGI-V-07176_05804 4 0.003 2.420
  1. Presence = number of genomes gene is present in /25 for ST111 and /23 for ST235