Table 4 Details of SNPs with significant associations with biofilm phenotype on stainless-steel within ST111 and ST235 genomes. Genes containing > 1 SNP site are in bold
From: Biofilm associated genotypes of multiple antibiotic resistant Pseudomonas aeruginosa
ST111 | |||
variant | Gene product | lrt-pvalue | beta |
1420097_C_T | Transglycosylase SLT domain-containing protein | 7.790E-03 | 1.160E+00 |
5765510_C_T | GGDEF and EAL domain-containing protein | 7.790E-03 | 1.160E+00 |
3148782_G_A | hypothetical protein | 7.790E-03 | 1.160E+00 |
5733260_G_A | Putative 2-dehydropantoate 2-reductase | 7.790E-03 | 1.160E+00 |
3227055_G_T | DedA membrane protein family | 7.790E-03 | 1.160E+00 |
460063_G_T | EcsC family protein | 7.790E-03 | 1.160E+00 |
1590045_A_G | Methyl-accepting chemotaxis protein McpU | 7.790E-03 | 1.160E+00 |
788564_G_A | Integral membrane protein mprF [Brucella suis] | 7.790E-03 | 1.160E+00 |
124758C_G | PAS domain-containing protein | 9.980E-03 | 9.950E-01 |
ST235 | |||
variant | Gene | lrt-pvalue | beta |
3107052_C_T | tRNA-Asn(gtt) | 1.14E-05 | 1.95E+00 |
1737948_T_C | DUF1983 domain-containing protein | 1.08E-04 | 2.18E+00 |
1580887_A_G | GTPase | 3.45E-04 | 2.33E+00 |
1549594_C_T | Relaxase | 3.45E-04 | 2.33E+00 |
1580485_A_G | GTPase | 3.45E-04 | 2.33E+00 |
3128027_C_G | Glycoside hydrolase family 19 protein | 3.52E-04 | 2.15E+00 |
4192259_C_G | Glycoside hydrolase family 19 protein (n.b. different gene to above) | 3.52E-04 | 2.15E+00 |
1553088_A_G | Conjugal transfer protein TraG N-terminal domain-containing protein | 4.58E-04 | -2.91E+00 |
1565427_G_C | TIGR03758 family integrating conjugative element protein | 4.58E-04 | -2.91E+00 |
3128516_G_A | Hypothetical protein | 5.38E-04 | 1.68E+00 |
3128498_C_G | Hypothetical protein | 5.38E-04 | 1.68E+00 |
312896T_G | VWA domain protein viaA | 5.38E-04 | 1.68E+00 |
1584342_T_C | DNA topoisomerase III | 6.85E-04 | 1.82E+00 |
310354C_T | Type I restriction endonuclease subunit R | 1.17E-03 | 2.64E+00 |
3101715_A_T | topoisomerase primase domain-containing protein dnaG | 1.17E-03 | 2.64E+00 |
3101859_T_C | topoisomerase primase domain-containing protein dnaG | 1.17E-03 | 2.64E+00 |
3101802_G_A | topoisomerase primase domain-containing protein dnaG | 1.17E-03 | 2.64E+00 |
3102546_C_T | topoisomerase primase domain-containing protein dnaG | 1.17E-03 | 2.64E+00 |
312840T_C | VWA domain protein viaA | 2.21E-03 | 1.55E+00 |
309466T_G | Type I restriction endonuclease subunit R | 2.92E-03 | 1.74E+00 |