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Table 4 Details of SNPs with significant associations with biofilm phenotype on stainless-steel within ST111 and ST235 genomes. Genes containing > 1 SNP site are in bold

From: Biofilm associated genotypes of multiple antibiotic resistant Pseudomonas aeruginosa

ST111
variant Gene product lrt-pvalue beta
1420097_C_T Transglycosylase SLT domain-containing protein 7.790E-03 1.160E+00
5765510_C_T GGDEF and EAL domain-containing protein 7.790E-03 1.160E+00
3148782_G_A hypothetical protein 7.790E-03 1.160E+00
5733260_G_A Putative 2-dehydropantoate 2-reductase 7.790E-03 1.160E+00
3227055_G_T DedA membrane protein family 7.790E-03 1.160E+00
460063_G_T EcsC family protein 7.790E-03 1.160E+00
1590045_A_G Methyl-accepting chemotaxis protein McpU 7.790E-03 1.160E+00
788564_G_A Integral membrane protein mprF [Brucella suis] 7.790E-03 1.160E+00
124758C_G PAS domain-containing protein 9.980E-03 9.950E-01
ST235
variant Gene lrt-pvalue beta
3107052_C_T tRNA-Asn(gtt) 1.14E-05 1.95E+00
1737948_T_C DUF1983 domain-containing protein 1.08E-04 2.18E+00
1580887_A_G GTPase 3.45E-04 2.33E+00
1549594_C_T Relaxase 3.45E-04 2.33E+00
1580485_A_G GTPase 3.45E-04 2.33E+00
3128027_C_G Glycoside hydrolase family 19 protein 3.52E-04 2.15E+00
4192259_C_G Glycoside hydrolase family 19 protein (n.b. different gene to above) 3.52E-04 2.15E+00
1553088_A_G Conjugal transfer protein TraG N-terminal domain-containing protein 4.58E-04 -2.91E+00
1565427_G_C TIGR03758 family integrating conjugative element protein 4.58E-04 -2.91E+00
3128516_G_A Hypothetical protein 5.38E-04 1.68E+00
3128498_C_G Hypothetical protein 5.38E-04 1.68E+00
312896T_G VWA domain protein viaA 5.38E-04 1.68E+00
1584342_T_C DNA topoisomerase III 6.85E-04 1.82E+00
310354C_T Type I restriction endonuclease subunit R 1.17E-03 2.64E+00
3101715_A_T topoisomerase primase domain-containing protein dnaG 1.17E-03 2.64E+00
3101859_T_C topoisomerase primase domain-containing protein dnaG 1.17E-03 2.64E+00
3101802_G_A topoisomerase primase domain-containing protein dnaG 1.17E-03 2.64E+00
3102546_C_T topoisomerase primase domain-containing protein dnaG 1.17E-03 2.64E+00
312840T_C VWA domain protein viaA 2.21E-03 1.55E+00
309466T_G Type I restriction endonuclease subunit R 2.92E-03 1.74E+00