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Table 1 Genomic characteristics of the 27 studied S. intermedius strains

From: Pangenome analysis and virulence profiling of Streptococcus intermedius

  Isolation sources Size (bp) CDS tmRNA tRNAs rRNA operons GC% Avg length CDS (bp) Coding % Plasmid Prophages Accession number Country
G1562 Brain abscess 2,052,377 1954 1 50 4 37.3 926 88.173 no 2 UENI00000000.1 France
G1563 Brain abscess 1,890,941 1814 1 50 4 37.7 911 80.54 no 1 UEND00000000.1 France
G1564 Brain abscess 1,887,926 1857 1 50 3 37.7 886 87.192 no 2 UENF00000000.1 France
G1565 Brain abscess 1,972,424 1905 1 50 3 37.6 905 87.4 no 1 UENG00000000.1 France
G1566 Brain abscess 1,897,154 1848 1 56 4 37.6 904 88.077 no 1 UICY00000000.1 France
G1567 Brain abscess 1,897,330 1849 1 50 4 37.6 903 88.033 no 1 UENA00000000.1 France
G1568 Brain abscess 1,898,090 1850 1 51 3 37.6 903 88.051 no 1 UENB00000000.1 France
TYG1620 Brain abscess 2,006,877 1957 1 61 4 37.6 893 87.107 no 3 AP014880.1 Japan
BA1 Brain abscess 1,965,880 1949 1 64 5 37.7 876 86.87 no 4 ANFT00000000.1 US
FDAARGOS_233 Abdominal abscess 1,914,006 1832 1 61 12 37.7 908 86.927 no 1 CP020433.2 US
G1552 Abdominal abscess 1,942,413 1883 1 51 3 37.6 899 87.182 no 1 UENJ00000000.1 France
G1553 Abdominal abscess 1,974,268 1907 1 59 4 37.6 909 87.782 no 2 NZ_UZBH00000000.1 France
G1556 Abdominal abscess 1,850,828 1805 1 56 6 37.8 901 87.87 no 1 UENK00000000.1 France
G1557 Abdominal abscess 1,898,297 1834 1 47 4 37.7 905 87.463 no 2 UENH00000000.1 France
B196 Broncho-pulmonary abscess, septic arthritis, osteomyelitis, pyomyositis 1,996,214 1884 1 61 4 37.6 924 87.175 no 1 CP003857.1 Canada
C270 Broncho-pulmonary abscess 1,960,728 1842 1 61 4 37.6 925 86.876 no 1 CP003858.1 Canada
G1554 Broncho-pulmonary abscess 1,886,668 1782 1 54 4 37.8 924 87.317 no 1 UENC00000000.1 France
631_SCON Broncho-pulmonary abscess 1,968,891 1856 1 55 3 37.8 930 87.666 no 1 JUZI00000000.1 US
KCOM 1545 Endodontic infection 1,908,201 1835 1 32 6 37.6 910 87.514 no 1 CP012718.1 South Korea
F0413 Endodontic infection 1,921,347 1913 1 62 5 37.6 883 87.891 no 2 AFXO00000000.1 US
G1555 Bone abscess 2,003,390 1971 1 55 4 37.5 888 87.382 no 2 UENE00000000.1 France
LC4 Liver abscess 1,914,382 1832 1 41 3 37.8 918 87.889 no 1 PNRP00000000.1 China
30,309 Liver abscess 1,956,646 1864 1 47 3 37.5 920 87.648 no 1 PNRI00000000.1 China
32,811 Liver abscess 1,971,034 1930 1 47 3 37.7 896 87.751 no 1 PNRH00000000.1 China
ATCC 27,335 NA 1,951,449 1871 1 62 4 37.7 908 87.091 no 1 ATFK00000000.1 US
JTH08 NA 1,933,610 1840 1 68 4 37.7 915 87.108 no 1 AP010969.1 Japan
SK54AJKN0 NA 1,910,718 1832 1 29 3 37.6 917 87.941 no 1 AJKN00000000.1 US
  1. NA not available, bp base pairs, CDS coding sequences, prophages Number of prophages