Table 1 Genomic characteristics of the 27 studied S. intermedius strains
From: Pangenome analysis and virulence profiling of Streptococcus intermedius
Isolation sources | Size (bp) | CDS | tmRNA | tRNAs | rRNA operons | GC% | Avg length CDS (bp) | Coding % | Plasmid | Prophages | Accession number | Country | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1562 | Brain abscess | 2,052,377 | 1954 | 1 | 50 | 4 | 37.3 | 926 | 88.173 | no | 2 | UENI00000000.1 | France |
G1563 | Brain abscess | 1,890,941 | 1814 | 1 | 50 | 4 | 37.7 | 911 | 80.54 | no | 1 | UEND00000000.1 | France |
G1564 | Brain abscess | 1,887,926 | 1857 | 1 | 50 | 3 | 37.7 | 886 | 87.192 | no | 2 | UENF00000000.1 | France |
G1565 | Brain abscess | 1,972,424 | 1905 | 1 | 50 | 3 | 37.6 | 905 | 87.4 | no | 1 | UENG00000000.1 | France |
G1566 | Brain abscess | 1,897,154 | 1848 | 1 | 56 | 4 | 37.6 | 904 | 88.077 | no | 1 | UICY00000000.1 | France |
G1567 | Brain abscess | 1,897,330 | 1849 | 1 | 50 | 4 | 37.6 | 903 | 88.033 | no | 1 | UENA00000000.1 | France |
G1568 | Brain abscess | 1,898,090 | 1850 | 1 | 51 | 3 | 37.6 | 903 | 88.051 | no | 1 | UENB00000000.1 | France |
TYG1620 | Brain abscess | 2,006,877 | 1957 | 1 | 61 | 4 | 37.6 | 893 | 87.107 | no | 3 | AP014880.1 | Japan |
BA1 | Brain abscess | 1,965,880 | 1949 | 1 | 64 | 5 | 37.7 | 876 | 86.87 | no | 4 | ANFT00000000.1 | US |
FDAARGOS_233 | Abdominal abscess | 1,914,006 | 1832 | 1 | 61 | 12 | 37.7 | 908 | 86.927 | no | 1 | CP020433.2 | US |
G1552 | Abdominal abscess | 1,942,413 | 1883 | 1 | 51 | 3 | 37.6 | 899 | 87.182 | no | 1 | UENJ00000000.1 | France |
G1553 | Abdominal abscess | 1,974,268 | 1907 | 1 | 59 | 4 | 37.6 | 909 | 87.782 | no | 2 | NZ_UZBH00000000.1 | France |
G1556 | Abdominal abscess | 1,850,828 | 1805 | 1 | 56 | 6 | 37.8 | 901 | 87.87 | no | 1 | UENK00000000.1 | France |
G1557 | Abdominal abscess | 1,898,297 | 1834 | 1 | 47 | 4 | 37.7 | 905 | 87.463 | no | 2 | UENH00000000.1 | France |
B196 | Broncho-pulmonary abscess, septic arthritis, osteomyelitis, pyomyositis | 1,996,214 | 1884 | 1 | 61 | 4 | 37.6 | 924 | 87.175 | no | 1 | CP003857.1 | Canada |
C270 | Broncho-pulmonary abscess | 1,960,728 | 1842 | 1 | 61 | 4 | 37.6 | 925 | 86.876 | no | 1 | CP003858.1 | Canada |
G1554 | Broncho-pulmonary abscess | 1,886,668 | 1782 | 1 | 54 | 4 | 37.8 | 924 | 87.317 | no | 1 | UENC00000000.1 | France |
631_SCON | Broncho-pulmonary abscess | 1,968,891 | 1856 | 1 | 55 | 3 | 37.8 | 930 | 87.666 | no | 1 | JUZI00000000.1 | US |
KCOM 1545 | Endodontic infection | 1,908,201 | 1835 | 1 | 32 | 6 | 37.6 | 910 | 87.514 | no | 1 | CP012718.1 | South Korea |
F0413 | Endodontic infection | 1,921,347 | 1913 | 1 | 62 | 5 | 37.6 | 883 | 87.891 | no | 2 | AFXO00000000.1 | US |
G1555 | Bone abscess | 2,003,390 | 1971 | 1 | 55 | 4 | 37.5 | 888 | 87.382 | no | 2 | UENE00000000.1 | France |
LC4 | Liver abscess | 1,914,382 | 1832 | 1 | 41 | 3 | 37.8 | 918 | 87.889 | no | 1 | PNRP00000000.1 | China |
30,309 | Liver abscess | 1,956,646 | 1864 | 1 | 47 | 3 | 37.5 | 920 | 87.648 | no | 1 | PNRI00000000.1 | China |
32,811 | Liver abscess | 1,971,034 | 1930 | 1 | 47 | 3 | 37.7 | 896 | 87.751 | no | 1 | PNRH00000000.1 | China |
ATCC 27,335 | NA | 1,951,449 | 1871 | 1 | 62 | 4 | 37.7 | 908 | 87.091 | no | 1 | ATFK00000000.1 | US |
JTH08 | NA | 1,933,610 | 1840 | 1 | 68 | 4 | 37.7 | 915 | 87.108 | no | 1 | AP010969.1 | Japan |
SK54AJKN0 | NA | 1,910,718 | 1832 | 1 | 29 | 3 | 37.6 | 917 | 87.941 | no | 1 | AJKN00000000.1 | US |