Table 4 List of common significant MTAs for a particular trait in Environment 1 (E1), Environment (E2), and combined environments (E1 and E2) at P-value ≤0.0001

GWPS

SNP_109*

980,521

C/T

5A

169

–

–

2.29E-04

0.82

6.93E-04

SNP_493#

3,025,448

G/A

2B

156

–

–

5.57E-04

1.09

4.46E-04

LTH

SNP_1800

3,025,720

C/A

6A

159

7.01E-04

−2.49

9.07E-04

−3.57

4.73E-04

SNP_1852

982,036

A/C

6A

175

9.09E-05

−3.24

4.29E-04

−4.29

1.21E-04

SNP_2448*

1,059,739

G/A

1A

127

6.60E-04

−4.53

5.72E-05

−7.77

8.05E-05

SNP_2933

1,091,284

G/T

6A

175

6.90E-04

−2.90

–

–

7.03E-04

SNP_2970

1,009,860

C/T

1A

175

–

–

8.93E-04

−5.51

7.84E-04

NSPP

SNP_11101

1,011,157

G/A

3B

104

–

–

1.26E-04

−0.67

4.14E-04

SNP_454*

1,001,462

A/G

4B

064

–

–

2.09E-04

0.56

7.08E-04

SNP_4595

1,090,297

G/T

7B

070

–

–

5.69E-04

−0.63

3.63E-04

NSPS

SNP_10510

1,079,112

C/T

7A

304

–

–

2.18E-04

−0.68

1.04E-04

SNP_12996

1,067,398

C/A

2B

055

–

–

9.23E-04

−0.87

3.50E-04

SNP_13896#

1,167,029

C/T

2B

164

–

–

2.19E-04

1.12

3.26E-04

SNP_1766

1,077,298

G/A

6A

193

–

–

4.14E-04

0.74

4.00E-04

SNP_1779#$

991,804

C/G

2A

089

–

–

4.31E-04

−0.48

4.42E-04

SNP_4596*$

1,090,518

T/A

6A

183

–

–

4.78E-05

1.17

5.24E-05

SNP_813#$

1,087,368

A/G

1A

127

–

–

3.45E-04

1.23

3.19E-04

SL

SNP_12504

1,091,267

A/G

4A

107

–

–

5.10E-05

0.49

5.78E-04

SLU

SNP_10924^@

3,064,834

A/G

5B

102

9.25E-04

0.04

1.89E-04

0.06

3.05E-08