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Table 2 Top 5 enriched GO terms of the differentially expressed genes during encystment

From: Transcriptome and metabolome analyses of cold and darkness-induced pellicle cysts of Scrippsiella trochoidea

  GO ID Term Annotated Significant Expected KS
CK vs. D5
BP GO:0006412 translation 482 99 17.58 2.50E-14
  GO:0055114 oxidation-reduction process 367 23 13.39 8.40E-06
  GO:0015991 ATP hydrolysis coupled proton transport 32 3 1.17 2.40E-05
  GO:0009765 photosynthesis, light harvesting 50 2 1.82 1.70E-04
  GO:0006108 malate metabolic process 11 1 0.4 4.60E-04
MF GO:0003735 structural constituent of ribosome 299 92 10.62 3.00E-22
  GO:0016168 chlorophyll binding 47 1 1.67 6.70E-04
  GO:0019829 cation transporting ATPase activity 45 2 1.6 7.20E-04
  GO:0030060  L-malate dehydrogenase activity 8 1 0.28 8.00E-04
  GO:0009055 electron carrier activity 45 9 1.6 8.60E-04
CC GO:0022627 cytosolic small ribosomal subunit 73 29 3.47 1.10E-09
  GO:0022625 cytosolic large ribosomal subunit 111 36 5.28 2.50E-08
  GO:0005840 ribosome 337 97 16.02 1.90E-05
  GO:0009535 chloroplast thylakoid membrane 76 3 3.61 2.20E-03
  GO:0015935 small ribosomal subunit 93 34 4.42 4.00E-03
CK vs. PC
BP GO:0015991 ATP hydrolysis coupled proton transport 32 4 0.94 3.20E-06
  GO:0009765 photosynthesis, light harvesting 50 3 1.48 2.90E-05
  GO:0018298 protein-chromophore linkage 46 3 1.36 6.90E-05
  GO:0055114 oxidation-reduction process 367 12 10.83 9.20E-05
  GO:0006006 glucose metabolic process 47 2 1.39 1.09E-03
MF GO:0016168 chlorophyll binding 47 3 1.52 4.90E-05
  GO:0016616 oxidoreductase activity, NAD or NADP as acceptor 66 1 2.14 6.20E-04
  GO:0019829 cation transporting ATPase activity 45 1 1.46 6.20E-04
  GO:0003677 DNA binding 87 9 2.82 6.40E-04
  GO:0003735 structural constituent of ribosome 299 17 9.69 8.50E-04
CC GO:0009535 chloroplast thylakoid membrane 76 4 2.3 3.20E-04
  GO:0034357 photosynthetic membrane 97 8 2.94 3.20E-04
  GO:0005840 ribosome 337 17 10.22 5.40E-04
  GO:0044454 nuclear chromosome part 32 1 0.97 3.98E-03
  GO:0045263 proton-transporting ATP synthase complex, coupling factor F0 8 3 0.24 4.13E-03
  1. CK represents the control group of vegetative cells in the exponential phase, D5 represents the group treated with cold and darkness for five hours, PC represents the group of pellicle cysts. BP, MF and CC represent biological process, molecular function and cellular component, respectively.