GO Terms | Nb genes | E | PValue | Clustered genes |
---|---|---|---|---|
Clustered pathways among 391 probes corresponding to 253 unique genes first selected to classify pigs on low/high RFI | ||||
GO:0006643 ~ membrane lipid metabolic process | 6 | 1.93 | 0.004 | TEX2, SPTLC2, PSAP, COL4A3BP, UGCG, SMPD3 |
GO:0006979 ~ response to oxidative stress | 8 | 1.66 | 0.006 | PLA2G4A, PSEN1, EPAS1, CLU, GPX3, JAK2, ADAM9, DHCR24 |
GO:0006869 ~ lipid transport | 8 | 1.59 | 0.003 | OSBPL3, PSAP, COL4A3BP, CLU, PCTP, ABCA1, APOM, CROT |
GO:0016310 ~ phosphorylation | 20 | 1.55 | 0.010 | IRAK2, FCER1A, ND2, TGFBR1, BMPR2, EIF2A, ULK4, GALK2, NDUFV3, VRK1, PSEN1, GCK, COL4A3BP, TGFBR3, JAK2, ATP5O, CIT, THBS1, MYLK, ADAM9 |
GO:0031349 ~ positive regulation of defense response | 6 | 1.34 | 0.003 | FCER1A, IRAK2, PLA2G4A, CADM1, IL6ST, JAK2 |
GO:0000267 ~ cell fraction | 23 | 1.33 | 0.036 | JPH4, CADM1, CYP51A1, SLC22A7, UGCG, HPS1, CCDC47, ATP1A1, NMB, ABCA1, NPR3, IL15, KARS, DCT, JUP, PLA2G4A, PSEN1, GCK, GPX3, SRR, ENO3, JAK2, ACSL3 |
GO:0009725 ~ response to hormone stimulus | 10 | 1.27 | 0.055 | PLA2G4A, ENPP1, SOCS3, TGFBR1, TGFBR3, JAK2, PIK3R3, THBS1, BRCA1, ADAM9 |
GO:0008361 ~ regulation of cell size | 5 | 1.25 | 0.295 | ENPP1, TGFBR1, SMAD4, TGFBR3, NTN1 |
GO:0030278 ~ regulation of ossification | 4 | 1.16 | 0.085 | PLA2G4A, ENPP1, IL6ST, BMPR2 |
GO:0017015 ~ regulation of transforming growth factor beta receptor signaling pathway | 4 | 1.09 | 0.015 | HTRA1, CHST11, SMAD4, THBS1 |
GO:0051091 ~ positive regulation of transcription factor activity | 4 | 1.05 | 0.045 | IRAK2, UBE2V1, TGFBR3, JAK2 |
GO:0042470 ~ melanosome | 5 | 1.03 | 0.033 | DCT, STOM, SERPINF1, RAB35, ATP1A1 |
GO:0007498 ~ mesoderm development | 4 | 1.02 | 0.075 | MACF1, BMPR2, EOMES, JAK2 |
Clustered pathways among 728 probes corresponding to 477 unique genes first selected to predict FCR | ||||
GO:0002694 ~ regulation of leukocyte activation | 13 | 1.89 | 0.002 | CD83, CD86, CD80, STAT5A, IL27, IL4R, IL1B, CD4, IL15, CD40, PAG1, THY1, SYK |
GO:0009100 ~ glycoprotein metabolic process | 14 | 1.79 | 0.003 | ATP7A, B3GNT9, MGAT4A, GALNT1, TRAK2, HPSE, CHST11, ACAN, CD4, FUT1, OGT, UGGT2, ST6GALNAC2, DHCR24 |
GO:0001817 ~ regulation of cytokine production | 15 | 1.65 | 0.000 | CADM1, PANX1, IGF2, STAT5A, IL27, CD40, NLRP3, DDX58, CD83, CD86, CD80, IL1B, CD4, CLEC7A, SYK |
GO:0051223 ~ regulation of protein transport | 8 | 1.65 | 0.034 | CADM1, PANX1, IGF2, ANG, IL1B, CD40, NLRP3, DNAJC1 |
GO:0002673 ~ regulation of acute inflammatory response | 5 | 1.51 | 0.002 | PLA2G4A, C3, IGF2, SERPING1, CCL5 |
GO:0052547 ~ regulation of peptidase activity | 7 | 1.39 | 0.028 | SLC11A2, CYCS, BCL2L13, HBXIP, NLRP3, EIF2AK3, DHCR24 |
GO:0046777 ~ protein amino acid autophosphorylation | 6 | 1.32 | 0.079 | FYN, CLK4, KIT, LRRK2, EIF2AK3, SYK |
GO:0050778 ~ positive regulation of immune response | 10 | 1.15 | 0.017 | CADM1, C3, FYN, STAT5A, IL1B, SERPING1, IL15, CLEC7A, THY1, SYK |
GO:0031349 ~ positive regulation of defense response | 6 | 1.01 | 0.047 | PLA2G4A, CADM1, C3, STAT5A, CLEC7A, CCL5 |
GO:0032881 ~ regulation of polysaccharide metabolic process | 3 | 1.01 | 0.060 | PPP1R3C, ENPP1, IGF2 |