From: ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw
Datasets | Average number of uniquely mapped reads | Average error rate | |||||
---|---|---|---|---|---|---|---|
Species | Type of replicate (#) | Sequencing layout and read length | Two-way average nuclear identity | Concatenated genome | Read classification | Concatenated genome | Read classification |
Arabidopsis halleri | Biological (2) | PE150 | 94.29 ± 3.94% | 17′258’758 | 18′311’330 | 3.98% | 1.16% |
Arabidopsis lyrata | Biological (2) | PE150 | 22′204’342 | 23′301’056 | 5.94% | 1.45% | |
Mimulus guttatus | Technical (4) | SE150 | N.A. | 1′420’116 | 1′288’800 | 26.78% | 7.52% |
Mimulus luteus | Technical (4) | SE150 | 3′889’458 | 3′760’614 | 9.80% | 2.29% | |
Gossypium arboreum | Technical (2) | PE125 | 91.07 ± 4.68% | 253′912’667 | 254′261’702 | 0.0044% | 0.0013% |
Gossipyium raimondii | Technical (2) | PE125 | 242′590’069 | 246′935’598 | 0.0039% | 0.0019% |