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Table 7 Gene expression values from the Ocular Tissue Database (OTDB), indicated as Affymetrix Probe Logarithmic Intensity Error (PLIER) normalized value. In bold are reported the genes found in common in the AGS and GLGS-UGLI cohorts

From: Genome-wide CNV investigation suggests a role for cadherin, Wnt, and p53 pathways in primary open-angle glaucoma

  

Ocular Tissues

 

Gene

Optic Nerve

Optic Nerve Head

Retina

Trabecular Meshwork

90th percentile

APC

163.958

209.972

–

–

 

FCHSD2

–

134.694

102.657

–

 

GJC1

–

–

–

413.055

 

HRAS

–

–

115.939

–

 

MSH2

–

–

104.639

–

 

NIPBL

117.136

165.756

135.751

141.999

 

PAFAH1B1

1328.740

1130.570

1181.810

1373.830

 

RAD50

154.762

243.466

135.328

207.515

 

SOS1

–

139.286

–

135.202

10th percentile

ARHGAP11B

9.146

7.245

8.961

6.504

 

ATM

–

–

–

10.924

 

BRCA2

12.279

10.740

13.335

9.430

 

CCDC73

10.275

5.375

7.035

4.718

 

FPR2

11.307

13.881

8.970

10.865

 

HLA-DRB1

2.499

10.861

1.764

–

 

HLA-DRB5

2.499

10.861

1.764

–

 

KIF20B

11.902

13.712

–

–

 

KLRC3

–

8.977

–

5.348

 

MGAM

–

–

12.893

13.025

 

PLK4

–

12.940

–

13.407

 

PRB1

13.405

12.965

6.413

9.600

 

PRB4

13.405

12.965

6.413

9.600

 

PSG1

6.338

12.973

–

7.741

 

PSG3

6.338

9.363

–

7.741

 

PSG4

6.338

9.363

–

7.741

 

PSG6

–

12.973

–

–

 

PSG9

–

12.973

–

–

 

PTEN

0.127

7.405

3.929

9.512

 

RHD

5.402

–

11.212

3.473

 

SCN1A

13.703

10.769

–

8.860

 

SYCP2

12.574

10.169

7.668

8.315

 

TBC1D3B

6.780

2.636

8.218

2.528